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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G11400.1
PEP
AT1G11400.1
Position on the Genome Chromosome Chr1
Start Position 3838777
End Position 3839978
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00046009
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
WIBG, Mago-binding
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Partner of Y14 and mago
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF09282
Pfam Description Details
InterPro ID
IPR015362,IPR039333,IPR036348
InterPro Description Details
GO ID
GO:0010628,GO:0051028,GO:0035145,GO:0005737,GO:0006417,GO:0003723,GO:0005654,GO:0000184,GO:0005730,GO:1903259
GO Description Details
GOslim ID
GO:0043170,GO:0005634,GO:0032991,GO:0005737,GO:0009057,GO:0016070,GO:0050789,GO:0005730,GO:0003676,GO:0015931,GO:0022411
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G11400
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Partner of Y14 and mago
OrthoDB(1 item)
217263at33090
WIBG, Mago-binding
Pfam(1 item)
 
Mago binding
InterPro(3 items)
 
WIBG, Mago-binding
Gene ontology(10 items)
BP
positive regulation of gene expression
BP
mRNA transport
CC
exon-exon junction complex
BP
regulation of translation
BP
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
BP
exon-exon junction complex disassembly
GO slim(11 items)
BP
macromolecule metabolic process
CC
protein-containing complex
BP
macromolecule catabolic process
BP
RNA metabolic process
BP
regulation of biological process
MF
nucleic acid binding
BP
nucleobase-containing compound transport
BP
cellular component disassembly

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.