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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G10230.1
PEP
AT1G10230.1
Position on the Genome Chromosome Chr1
Start Position 3355675
End Position 3356151
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01948345
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
SKP1 component, dimerisation
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
SKP1-like protein 18
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF03931,PF01466
Pfam Description Details
InterPro ID
IPR001232,IPR016073,IPR016072,IPR036296,IPR016897,IPR011333
InterPro Description Details
GO ID
GO:0005634,GO:0005737,GO:0016567,GO:0031146,GO:0097602
GO Description Details
GOslim ID
GO:0005737,GO:0009057,GO:0005634,GO:0005515,GO:0006508,GO:0006464
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G10230
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
SKP1-like protein 18
OrthoDB(1 item)
205546at33090
SKP1 component, dimerisation
Pfam(2 items)
 
Skp1 family, tetramerisation domain
 
Skp1 family, dimerisation domain
InterPro(6 items)
 
SKP1 component, POZ domain
 
SKP1 component, dimerisation
 
SKP1-like_dim_sf
 
SKP1/BTB/POZ_sf
Gene ontology(5 items)
BP
protein ubiquitination
BP
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
MF
cullin family protein binding
GO slim(6 items)
BP
macromolecule catabolic process
MF
protein binding
BP
cellular protein modification process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.