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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G08550.1
PEP
AT1G08550.1
Position on the Genome Chromosome Chr1
Start Position 2707462
End Position 2709387
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00084119
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
VDE lipocalin domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Violaxanthin de-epoxidase, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF07137
Pfam Description Details
InterPro ID
IPR010788,IPR012674,IPR022272
InterPro Description Details
GO ID
GO:0010028,GO:0005576,GO:0016491,GO:0009534,GO:0006631,GO:0005829,GO:0031977,GO:0046422,GO:0009507,GO:0015994,GO:0009408,GO:0019904,GO:0009535
GO Description Details
GOslim ID
GO:0006082,GO:0006725,GO:0044255,GO:0009536,GO:0005737,GO:0016020,GO:0009579,GO:0005576,GO:0016491,GO:0005515,GO:0050896,GO:0006807,GO:0046483
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G08550
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Violaxanthin de-epoxidase, chloroplastic
OrthoDB(1 item)
58672at33090
VDE lipocalin domain
Pfam(1 item)
 
VDE lipocalin domain
InterPro(3 items)
 
VDE lipocalin domain
Gene ontology(13 items)
BP
xanthophyll cycle
CC
extracellular region
MF
oxidoreductase activity
CC
chloroplast thylakoid
BP
fatty acid metabolic process
CC
thylakoid lumen
MF
violaxanthin de-epoxidase activity
BP
chlorophyll metabolic process
BP
response to heat
MF
protein domain specific binding
CC
chloroplast thylakoid membrane
GO slim(13 items)
BP
organic acid metabolic process
BP
cellular aromatic compound metabolic process
BP
cellular lipid metabolic process
CC
extracellular region
MF
oxidoreductase activity
MF
protein binding
BP
response to stimulus
BP
nitrogen compound metabolic process
BP
heterocycle metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.