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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G06680.1
PEP
AT1G06680.1
Position on the Genome Chromosome Chr1
Start Position 2047940
End Position 2049186
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00437979
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
PsbP, C-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Oxygen-evolving enhancer protein 2-1, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF01789
Pfam Description Details
InterPro ID
IPR002683,IPR016123
InterPro Description Details
GO ID
GO:0009941,GO:0009534,GO:0009543,GO:0019898,GO:0009507,GO:0042742,GO:0048046,GO:0019904,GO:0009535,GO:0009654,GO:0005509,GO:0008266,GO:0005576,GO:0009570,GO:0009579,GO:0031977,GO:0019684,GO:0003729
GO Description Details
GOslim ID
GO:0016020,GO:0005576,GO:0009579,GO:0009536,GO:0006091,GO:0043167,GO:0003676,GO:0005515,GO:0050896,GO:0009521,GO:0044419,GO:0015979
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G06680
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Oxygen-evolving enhancer protein 2-1, chloroplastic
OrthoDB(1 item)
172596at33090
PsbP, C-terminal
Pfam(1 item)
InterPro(2 items)
 
Mog1/PsbP_a/b/a-sand
Gene ontology(18 items)
CC
chloroplast envelope
CC
chloroplast thylakoid
CC
chloroplast thylakoid lumen
CC
extrinsic component of membrane
BP
defense response to bacterium
MF
protein domain specific binding
CC
chloroplast thylakoid membrane
CC
photosystem II oxygen evolving complex
MF
calcium ion binding
MF
poly(U) RNA binding
CC
extracellular region
CC
chloroplast stroma
CC
thylakoid lumen
BP
photosynthesis, light reaction
GO slim(12 items)
CC
extracellular region
BP
generation of precursor metabolites and energy
MF
nucleic acid binding
MF
protein binding
BP
response to stimulus
BP
interspecies interaction between organisms
BP
photosynthesis

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.