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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G06040.1
PEP
AT1G06040.1
Position on the Genome Chromosome Chr1
Start Position 1828662
End Position 1829659
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00250170
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
B-box-type zinc finger
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
B-box zinc finger protein 24
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00643
Pfam Description Details
InterPro ID
IPR000315
InterPro Description Details
GO ID
GO:0005634,GO:0010228,GO:0003700,GO:0009640,GO:0090351,GO:0080167,GO:0003677,GO:0006355,GO:0008270,GO:0009416,GO:0048573,GO:0003712,GO:1902448
GO Description Details
GOslim ID
GO:0050789,GO:0016070,GO:0065009,GO:0003676,GO:0043167,GO:0005634,GO:0006351,GO:0032501,GO:0000003,GO:0050896,GO:0032502,GO:0009059
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
DBB family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
B-box zinc finger protein 24
OrthoDB(1 item)
193676at33090
B-box-type zinc finger
Pfam(1 item)
 
B-box zinc finger
InterPro(1 item)
 
B-box-type zinc finger
Gene ontology(13 items)
BP
vegetative to reproductive phase transition of meristem
MF
DNA-binding transcription factor activity
BP
photomorphogenesis
BP
seedling development
BP
response to karrikin
BP
regulation of transcription, DNA-templated
MF
zinc ion binding
BP
response to light stimulus
BP
photoperiodism, flowering
MF
transcription coregulator activity
BP
positive regulation of shade avoidance
GO slim(12 items)
BP
regulation of biological process
BP
RNA metabolic process
BP
regulation of molecular function
MF
nucleic acid binding
BP
transcription, DNA-templated
BP
multicellular organismal process
BP
response to stimulus
BP
developmental process
BP
macromolecule biosynthetic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.