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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G05750.1
PEP
AT1G05750.1
Position on the Genome Chromosome Chr1
Start Position 1721523
End Position 1723025
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00308117
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Pentatricopeptide repeat
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Pentatricopeptide repeat-containing protein At1g05750, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF01535,PF13041
Pfam Description Details
InterPro ID
IPR002885,IPR011990
InterPro Description Details
GO ID
GO:0043231,GO:0009507,GO:0009451,GO:0003723
GO Description Details
GOslim ID
GO:0003676,GO:0016070,GO:0009536,GO:0043231,GO:0043412
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Pentatricopeptide repeat-containing protein At1g05750, chloroplastic
OrthoDB(1 item)
110006at33090
Pentatricopeptide repeat
Pfam(2 items)
 
PPR repeat
 
PPR repeat family
InterPro(2 items)
 
Pentatricopeptide repeat
 
TPR-like_helical_dom_sf
Gene ontology(4 items)
CC
intracellular membrane-bounded organelle
BP
RNA modification
GO slim(5 items)
MF
nucleic acid binding
BP
RNA metabolic process
CC
intracellular membrane-bounded organelle
BP
macromolecule modification

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.