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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G04530.1
PEP
AT1G04530.1
Position on the Genome Chromosome Chr1
Start Position 1234456
End Position 1235895
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00359201
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Tetratricopeptide repeat-containing domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Uncharacterized protein
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF13181
Pfam Description Details
InterPro ID
IPR011990,IPR003107,IPR019734,IPR013026
InterPro Description Details
GO ID
GO:0006396
GO Description Details
GOslim ID
GO:0006396
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Uncharacterized protein
OrthoDB(1 item)
165983at33090
Tetratricopeptide repeat-containing domain
Pfam(1 item)
 
Tetratricopeptide repeat
InterPro(4 items)
 
TPR-like_helical_dom_sf
 
HAT (Half-A-TPR) repeat
 
Tetratricopeptide repeat
 
TPR-contain_dom
Gene ontology(1 item)
BP
RNA processing
GO slim(1 item)
BP
RNA processing

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.