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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G02860.1
PEP
AT1G02860.1
Position on the Genome Chromosome Chr1
Start Position 635474
End Position 637083
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00169365
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, RING-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
E3 ubiquitin-protein ligase BAH1
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
NA
Pfam Description
InterPro ID
IPR001841,IPR013083,IPR004331,IPR017907,IPR033326
InterPro Description Details
GO ID
GO:0009627,GO:0004842,GO:0046872,GO:0009751,GO:0010337,GO:0010167,GO:0009626,GO:0080021,GO:0005634,GO:0005886,GO:0042742,GO:0016607,GO:0009697
GO Description Details
GOslim ID
GO:0044419,GO:0042180,GO:0006464,GO:0006725,GO:0050896,GO:0005634,GO:0002376,GO:0050789,GO:0006082,GO:0019787,GO:0043167,GO:0016020
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G02860
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
E3 ubiquitin-protein ligase BAH1
OrthoDB(1 item)
132417at33090
Zinc finger, RING-type
InterPro(5 items)
 
Zinc finger, RING-type
 
Znf_RING/FYVE/PHD
Gene ontology(13 items)
BP
systemic acquired resistance
MF
ubiquitin-protein transferase activity
MF
metal ion binding
BP
response to salicylic acid
BP
regulation of salicylic acid metabolic process
BP
response to nitrate
BP
plant-type hypersensitive response
BP
response to benzoic acid
CC
plasma membrane
BP
defense response to bacterium
CC
nuclear speck
BP
salicylic acid biosynthetic process
GO slim(12 items)
BP
interspecies interaction between organisms
BP
cellular ketone metabolic process
BP
cellular protein modification process
BP
cellular aromatic compound metabolic process
BP
response to stimulus
BP
immune system process
BP
regulation of biological process
BP
organic acid metabolic process
MF
ubiquitin-like protein transferase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.