Plant GARDEN
How To ▶︎

JA

EN

TOP > Species list > Theobroma cacao > genome data

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Theobroma cacao

Assembled Sequences

Theobroma cacao , Cacao , カカオ , Theobroma cacao , Cacao , カカオ , GenBank , EMBL , DDBJ

Assembly Name Biological Sample Assembly Level Annotation
(gff / gff3)		 Gene
(cds / gene)		 Hayai
Annotation
ZEN		 Transcripts
(cDNA / mRNA)		 Amino Acid
(pep / aa)		 Download JBrowse Comments

Theobroma_cacao_criollo_chr.v2.0

Belizean Criollo, genotype B97-61/B2

Chromosome

●

●

●

●

●

Belizean Criollo is a group of relic landraces.

Tcacao_523_v2.0

Matina 1-6

Chromosome

●

●

●

●

●

Matina 1-6 belongs to the most cultivated cacao type.

SRA Sequences

Sequence Type

 Biological Sample Sequence Name Accession JBrowse Comments

Theobroma_cacao_criollo_chr.v2.0

Whole Genome Sequence (Short Read)

fya_162

SRA765193

SRX4629507

Whole Genome Sequence (Short Read)

fya_49

SRA765193

SRX4629583

Whole Genome Sequence (Short Read)

fya_131

SRA765193

SRX4629588

Whole Genome Sequence (Short Read)

fya_130

SRA765193

SRX4629607

Whole Genome Sequence (Short Read)

fya_23

SRA765193

SRX4629648

Whole Genome Sequence (Short Read)

fya_150

SRA765193

SRX4629663

Whole Genome Sequence (Short Read)

KER-6

SRA936635

SRX6686784

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-246

SRA936635

SRX6686785

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

GU-195V

SRA936635

SRX6686786

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

GU-195V

SRA936635

SRX6686787

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

GU-195V

SRA936635

SRX6686788

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-16

SRA936635

SRX6686789

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

IMC-31

SRA936635

SRX6686790

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

IMC-31

SRA936635

SRX6686791

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

IMC-57

SRA936635

SRX6686792

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

IMC-57

SRA936635

SRX6686793

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

GU-257E

SRA936635

SRX6686794

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

IMC-57

SRA936635

SRX6686795

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

GU-257E

SRA936635

SRX6686796

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

GU-257E

SRA936635

SRX6686797

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

OYA-2B

SRA936635

SRX6686798

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

OYA-2B

SRA936635

SRX6686799

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

Pina

SRA936635

SRX6686801

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

Pina

SRA936635

SRX6686802

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

OYA-2B

SRA936635

SRX6686803

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

Pina

SRA936635

SRX6686804

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

KER-1L

SRA936635

SRX6686805

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

GU-123V

SRA936635

SRX6686806

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

KER-1L

SRA936635

SRX6686807

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

KER-1L

SRA936635

SRX6686808

population:Guiana; phenotype:Resistant

Whole Genome Sequence (Short Read)

GU-123V

SRA936635

SRX6686809

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

GU-123V

SRA936635

SRX6686810

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-246

SRA936635

SRX6686811

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

PA-81

SRA936635

SRX6686813

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-81

SRA936635

SRX6686814

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-246

SRA936635

SRX6686817

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

NA-70

SRA936635

SRX6686818

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-70

SRA936635

SRX6686819

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-33

SRA936635

SRX6686820

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-33

SRA936635

SRX6686821

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-34

SRA936635

SRX6686822

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-33

SRA936635

SRX6686823

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-34

SRA936635

SRX6686824

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-34

SRA936635

SRX6686825

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-807

SRA936635

SRX6686826

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-807

SRA936635

SRX6686827

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-16

SRA936635

SRX6686828

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

PA-16

SRA936635

SRX6686829

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

PA-13

SRA936635

SRX6686830

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

PA-13

SRA936635

SRX6686831

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

PA-13

SRA936635

SRX6686832

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

Amaz-15/15

SRA936635

SRX6686833

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

Amaz-15/15

SRA936635

SRX6686834

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

SPEC-54/1

SRA936635

SRX6686835

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

SPEC-54/1

SRA936635

SRX6686836

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

SPEC-54/1

SRA936635

SRX6686837

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

NA-70

SRA936635

SRX6686838

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

Amaz-15/15

SRA936635

SRX6686839

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

COCA-3370-5

SRA936635

SRX6686840

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

COCA-3370-5

SRA936635

SRX6686841

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

COCA-3370-5

SRA936635

SRX6686842

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

Amaz-12

SRA936635

SRX6686843

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

Amaz-12

SRA936635

SRX6686844

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

IMC-105

SRA936635

SRX6686845

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

IMC-105

SRA936635

SRX6686846

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

IMC-60

SRA936635

SRX6686847

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

IMC-60

SRA936635

SRX6686848

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

IMC-60

SRA936635

SRX6686849

population:Iquitos; phenotype:Resistant

Whole Genome Sequence (Short Read)

Amaz-12

SRA936635

SRX6686850

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

IMC-105

SRA936635

SRX6686851

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

IMC-31

SRA936635

SRX6686852

population:Iquitos; phenotype:Susceptible

Whole Genome Sequence (Short Read)

ELP-37A

SRA936635

SRX6686853

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

ELP-37A

SRA936635

SRX6686854

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

ELP-37A

SRA936635

SRX6686855

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

KER-6

SRA936635

SRX6686856

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

KER-6

SRA936635

SRX6686857

population:Guiana; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-299

SRA936635

SRX6686862

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-299

SRA936635

SRX6686863

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-107

SRA936635

SRX6686864

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-299

SRA936635

SRX6686865

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-71

SRA936635

SRX6686866

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-279

SRA936635

SRX6686867

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

PA-71

SRA936635

SRX6686870

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-710

SRA936635

SRX6686879

population:Nanay; phenotype:Resistant

Whole Genome Sequence (Short Read)

NA-807

SRA936635

SRX6686880

population:Nanay; phenotype:Susceptible

Whole Genome Sequence (Short Read)

NA-916

SRA936635

SRX6686881

population:Nanay; phenotype:Resistant

Whole Genome Sequence (Short Read)

NA-916

SRA936635

SRX6686882

population:Nanay; phenotype:Resistant

Whole Genome Sequence (Short Read)

NA-710

SRA936635

SRX6686883

population:Nanay; phenotype:Resistant

Whole Genome Sequence (Short Read)

NA-710

SRA936635

SRX6686884

population:Nanay; phenotype:Resistant

Whole Genome Sequence (Short Read)

Pound-7

SRA936635

SRX6686885

population:Nanay; phenotype:Resistant

Whole Genome Sequence (Short Read)

Pound-7

SRA936635

SRX6686886

population:Nanay; phenotype:Resistant

Whole Genome Sequence (Short Read)

Pound-7

SRA936635

SRX6686887

population:Nanay; phenotype:Resistant

Whole Genome Sequence (Short Read)

NA-916

SRA936635

SRX6686888

population:Nanay; phenotype:Resistant

Whole Genome Sequence (Short Read)

PA-107

SRA936635

SRX6686897

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-107

SRA936635

SRX6686898

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-279

SRA936635

SRX6686901

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

PA-279

SRA936635

SRX6686902

population:Maranon; phenotype:Resistant

Whole Genome Sequence (Short Read)

PA-71

SRA936635

SRX6686904

population:Maranon; phenotype:Susceptible

Whole Genome Sequence (Short Read)

PA-81

SRA936635

SRX6686907

population:Maranon; phenotype:Susceptible