Sequence Name:Tcacao_523_v2.0
Assembly Name | Tcacao_523_v2.0 | Biological Sample | Matina 1-6 |
Number of Sequences | 82 | Number of Chromosomes | 2n = 2x = 20 |
Total Length (bp) | 341,709,215 | N50 Length (bp) | 35,454,299 |
Number of Genes | 39,991 | Number of Genes Source File | Tcacao_523_v2.1.protein.fa |
Number of Genes Annotated by Hayai-annotation | 39,991 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio | Read Depth | 69x |
Assembly Method | MECAT, QUIVER | Estimated Genome Size (Mb) | NA |
Sequencing Method Comments | NA | Comments | Matina 1-6 belongs to the most cultivated cacao type. |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Juan C Motamayor (Mars Inc.) | Data Source | Cacao Genome Database |
DOI/PMID | 10.1186/gb-2013-14-6-r53 | Data Source URL | https://www.cacaogenomedb.org/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:98.3%[S:97.4%,D:0.9%],F:1.0%,M:0.7%,n:1614 | BUSCO Gene (pep/cds) | C:99.4%[S:66.5%,D:32.9%],F:0.2%,M:0.4%,n:1614 |