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アセンブル , シーケンス , Assemble , Sequence , Theobroma cacao , Cacao , カカオ

Theobroma cacao

Genome Assembly ID:t3641.G002

Sequence Name:Tcacao_523_v2.0

Details of the Assembled Genome Sequences

Assembly Name Tcacao_523_v2.0 Biological Sample Matina 1-6
Number of Sequences 82 Number of Chromosomes 2n = 2x = 20
Total Length (bp) 341,709,215 N50 Length (bp) 35,454,299
Number of Genes 39,991 Number of Genes Source File Tcacao_523_v2.1.protein.fa
Number of Genes Annotated by Hayai-annotation 39,991 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio Read Depth 69x
Assembly Method MECAT, QUIVER Estimated Genome Size (Mb) NA
Sequencing Method Comments NA Comments Matina 1-6 belongs to the most cultivated cacao type.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Juan C Motamayor (Mars Inc.) Data Source Cacao Genome Database
DOI/PMID 10.1186/gb-2013-14-6-r53 Data Source URL https://www.cacaogenomedb.org/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.3%[S:97.4%,D:0.9%],F:1.0%,M:0.7%,n:1614 BUSCO Gene (pep/cds) C:99.4%[S:66.5%,D:32.9%],F:0.2%,M:0.4%,n:1614

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