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アセンブル , シーケンス , Assemble , Sequence , Theobroma cacao , Cacao , カカオ

Theobroma cacao

Genome Assembly ID:t3641.G001

Sequence Name:Theobroma_cacao_criollo_chr.v2.0

Details of the Assembled Genome Sequences

Assembly Name Theobroma_cacao_criollo_chr.v2.0 Biological Sample Belizean Criollo, genotype B97-61/B2
Number of Sequences 11 Number of Chromosomes 2n = 2x = 20
Total Length (bp) 324,761,211 N50 Length (bp) 36,364,294
Number of Genes 30,655 Number of Genes Source File Theobroma_cacaoV2_annot_protein.faa
Number of Genes Annotated by Hayai-annotation 30,655 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, PacBIo Read Depth 21x
Assembly Method Newbler Estimated Genome Size (Mb) 430
Sequencing Method Comments NA Comments Belizean Criollo is a group of relic landraces.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author X. Argout (Centre de cooperation internationale en recherche agronomique pour le developpement (CIRAD)) Data Source Cacao Genome Hub
DOI/PMID 10.1186/s12864-017-4120-9 Data Source URL https://cocoa-genome-hub.southgreen.fr/node/4
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.4%[S:97.8%,D:0.6%],F:1.0%,M:0.6%,n:1614 BUSCO Gene (pep/cds) C:99.7%[S:66.9%,D:32.8%],F:0.1%,M:0.2%,n:1614

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