Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0641100-04
CDS Infomation	cds chromosome:IRGSP-1.0:12:27495818:27508326:-1 gene:Os12g0641100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SALT OVERLY SENSITIVE 1 description:Similar to Na+/H+ antiporter. (Os12t0641100-01);Similar to Na+/H+ antiporter. (Os12t0641100-02);Plasma membrane Na+/H+ antiporter, Salt stress (Os12t0641100-03);Plasma membrane Na+/H+ antiporter, Salt tolerance (Os12t0641100-04)
Sequence	ATGGACAATCCCGAGGCGGAGCCTGATGACGCGGTGCTCTTCGTCGGGGTCTCCCTCGTC CTCGGCATCGCCTCCCGCCACCTCCTCCGGGGCACCCGCGTCCCCTACACCGTCGCCCTC CTCGTCCTCGGCGTCGCCCTCGGATCGCTCGAATTTGGCACAAAACATGGCATGGGCAAA CTCGGAGCCGGCATTCGTATCTGGGCTAACATTAATCCTGATCTTCTTCTGGCTGTTTTT CTACCCGCTCTTCTTTTTGAAAGTTCCTTTTCCATGGAAATACACCAAATCAAGAAATGT ATGGCACAAATGGTGTTACTTGCTGGACCTGGTGTGCTAATATCAACCTTTTTCCTAGGC TCTGCTCTAAAGCTCACTTTTCCATACAACTGGAACTGGAAAACATCATTGTTGCTTGGT GGATTGCTTAGTGCAACTGACCCCGTTGCTGTTGTTGCACTGCTAAAAGAACTTGGCGCA AGTAAAAAGCTTAGTACCATAATTGAGGGAGAATCCTTAATGAATGATGGGACTGCTATT GTTGTGTATCAGTTATTCTATAGGATGGTGCTTGGAAGAACTTTCGATGCAGGATCAATA ATAAAATTCTTGTCAGAAGTTTCACTTGGAGCTGTTGCTCTGGGCCTTGCTTTTGGAATT GCATCAGTACTGTGGCTGGGCTTTATTTTTAATGATACAATCATAGAGATCGCGCTTACT CTTGCTGTCAGCTACATTGCTTTCTTCACTGCACAAGATGCACTGGAGGTCTCTGGTGTT TTGACCGTCATGACACTGGGAATGTTCTATGCCGCTTTTGCAAAAACTGCTTTTAAGGGT GACAGTCAGCAAAGCTTGCATCATTTCTGGGAAATGGTTGCTTATATAGCAAACACACTT ATATTTATACTGAGTGGGGTTGTTATTGCAGATGGAGTACTAGAAAATAATGTCCATTTC GAGAGGCACGGTGCTTCATGGGGCTTCCTTCTTCTGCTCTATGTATTTGTGCAAATTTCT CGGATATTAGTTGTTGTTATTTTGTATCCATTGTTGCGCCACTTTGGGTATGGTTTGGAC TTGAAAGAAGCCACAATTCTTGTTTGGGCGGGACTGCGAGGGGCTGTTGCTCTGTCTCTA TCATTATCTGTTAAGCGTGCTAGTGATGCAGTTCAGACCCATCTGAAACCAGTTGACGGA ACAATGTTTGTGTTCTTCACTGGTGGCATCGTGTTTTTGACATTGATTTTTAATGGTTCT ACTACACAATTTTTGTTGCATCTACTTGGAATGGACAGATTAGCAGCAACAAAGCTTCGC ATATTGAATTATACAAAATATGAAATGCTAAACAAGGCATTGGAGGCTTTTGGTGATCTT AGGGATGATGAGGAACTTGGTCCTCCTGCTGATTGGGTTACTGTAAAGAAATATATCACA TGCTTGAACGACTTGGACGATGAGCCTGTGCATCCTCATGCTGTTTCTGACAGAAATGAT CGCATGCATACCATGAACTTAAGGGACATCCGTGTGCGGCTTCTAAATGGTGTCCAAGCT GCTTACTGGGGAATGCTTGAAGAAGGACGAATAACTCAAACCACTGCAAATATTTTAATG AGATCGGTTGATGAAGCTATGGATCTTGTTCCTACCCAAGAATTATGTGACTGGAAGGGT TTGCGGTCCAATGTCCATTTTCCAAATTACTATAGGTTCCTTCAAATGAGCAGGTTGCCA CGAAGGCTTATCACTTACTTCACAGTAGAAAGACTGGAGTCAGGATGTTACATCTGTGCT GCATTTCTCCGTGCTCATAGAATCGCAAGACGGCAGCTACATGACTTTCTTGGTGATAGT GAGGTTGCCAGAATTGTTATTGATGAAAGTAATGCTGAGGGAGAGGAGGCTAGAAAATTC TTGGAAGATGTTCGTGTTACATTCCCTCAGGTGCTTCGTGTGCTGAAGACTCGACAAGTA ACATATTCGGTATTGACCCACTTGAGTGAGTATATTCAAAATCTCCAGAAGACTGGGTTG CTGGAAGAAAAGGAAATGGCCCATCTAGATGATGCTTTGCAGACAGACTTGAAGAAGTTC AAGAGGAATCCACCATTGGTAAAAATGCCAAGAGTCAGTGATCTTTTGAACACTCATCCG TTAGTTGGTGCACTGCCTGCTGCGATGCGTGATCCTTTATTAAGTAGCACAAAAGAAACA GTAAAAGGACATGGCACAATCCTTTATAGAGAGGGCTCAAGGCCAACTGGTATATGGCTT GTTTCGATTGGAGTAGTAAAGTGGACAAGTCAGAGATTAAGCAGCAGGCATTCATTGGAT CCAATTTTATCACATGGCAGCACTTTGGGCCTGTATGAGGTGCTGATTGGAAAACCTTAT ATCTGTGACATGATTACAGATTCTGTGGTGCACTGCTTCTTCATTGAAGCTGAAAAGATA GAGCAATTGCGTCAATCAGATCCTTCTATTGAGATTTTTCTGTGGCAGGAAAGTGCTCTA GTCGTTGCCAGGCTTTTGCTCCCTATGATGTTTGAGAAAATGGCAACACATGAGCTCAGG GTTCTCATCACTGAAAGATCTACTATGAACATCTACATTAAGGGCGAAGAAATTGAACTT GAGCAGAATTTCATTGGCATCTTACTGGAAGGATTTTTGAAGACCAAGAACCAAACTTTG ATCACACCTCCAGGGTTACTGCTACCACCAAATGCCGACTTGAACTTATTTGGTCTCGAG TCATCAGCTATAAACCGCATTGACTACTGTTATACAGCACCCAGCTATCAGGTGGAGGCT AGAGCAAGGATTTTGTTCGTTGAGATAGGGAGGCCCGAAATAGAGGCGGATCTGCAAAGG AGTGCGTCATTGATATCTCAAACCCTTGAACTGCCTCGGACACAAAGCAAGGAGCACAGC GGTTTGCTCAGCTGGCCGGAAAGCTTCAGAAAATCCAGGGGAGCTCAGAATGGTGCCAGC TTAACTGAAATCAGAGACCATCCAGCAAGCTTCTCTGCAAGAGCATTGCAGCTGAGCATG TACGGGAGCATGATCAATGACATGAAGTCCGGTCAGGGTCAGGGTCAGAGGAGGCAGAGG CATCGTCACACGAAAGCAAGCTCTAATAAAGCGCACAGCTCGTCGTACCCAAGAGTGCCT TCGAGGTCGTCCAACACGCAGAGGCCCCTGCTGTCTGTGCAGTCCGAGGGTGCCAACATG ACGACGGCAAGGCAGGCTGCTGCTGCTGGTGCTTCTCTGCCGCCGGAGCCGGAGGAGGCA GGACGGCGGCGGCGGCGACAACGCAAGGCAATAGAAGAGGACGAGGACAACTCGAGCGAT GAGTCGGCCGGGGAAGAGGTGATTGTCAGAGTCGATTCTCCCAGCATGCTCACCTTCCGT CAGCCCTCCAGCGCTGCTGATCGATGA

Peptide Sequence

PEP ID	Os12t0641100-04
PEP Infomation	pep chromosome:IRGSP-1.0:12:27495818:27508326:-1 gene:Os12g0641100 transcript:Os12t0641100-04 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SALT OVERLY SENSITIVE 1 description:Similar to Na+/H+ antiporter. (Os12t0641100-01);Similar to Na+/H+ antiporter. (Os12t0641100-02);Plasma membrane Na+/H+ antiporter, Salt stress (Os12t0641100-03);Plasma membrane Na+/H+ antiporter, Salt tolerance (Os12t0641100-04)
Sequence	MDNPEAEPDDAVLFVGVSLVLGIASRHLLRGTRVPYTVALLVLGVALGSLEFGTKHGMGK LGAGIRIWANINPDLLLAVFLPALLFESSFSMEIHQIKKCMAQMVLLAGPGVLISTFFLG SALKLTFPYNWNWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESLMNDGTAI VVYQLFYRMVLGRTFDAGSIIKFLSEVSLGAVALGLAFGIASVLWLGFIFNDTIIEIALT LAVSYIAFFTAQDALEVSGVLTVMTLGMFYAAFAKTAFKGDSQQSLHHFWEMVAYIANTL IFILSGVVIADGVLENNVHFERHGASWGFLLLLYVFVQISRILVVVILYPLLRHFGYGLD LKEATILVWAGLRGAVALSLSLSVKRASDAVQTHLKPVDGTMFVFFTGGIVFLTLIFNGS TTQFLLHLLGMDRLAATKLRILNYTKYEMLNKALEAFGDLRDDEELGPPADWVTVKKYIT CLNDLDDEPVHPHAVSDRNDRMHTMNLRDIRVRLLNGVQAAYWGMLEEGRITQTTANILM RSVDEAMDLVPTQELCDWKGLRSNVHFPNYYRFLQMSRLPRRLITYFTVERLESGCYICA AFLRAHRIARRQLHDFLGDSEVARIVIDESNAEGEEARKFLEDVRVTFPQVLRVLKTRQV TYSVLTHLSEYIQNLQKTGLLEEKEMAHLDDALQTDLKKFKRNPPLVKMPRVSDLLNTHP LVGALPAAMRDPLLSSTKETVKGHGTILYREGSRPTGIWLVSIGVVKWTSQRLSSRHSLD PILSHGSTLGLYEVLIGKPYICDMITDSVVHCFFIEAEKIEQLRQSDPSIEIFLWQESAL VVARLLLPMMFEKMATHELRVLITERSTMNIYIKGEEIELEQNFIGILLEGFLKTKNQTL ITPPGLLLPPNADLNLFGLESSAINRIDYCYTAPSYQVEARARILFVEIGRPEIEADLQR SASLISQTLELPRTQSKEHSGLLSWPESFRKSRGAQNGASLTEIRDHPASFSARALQLSM YGSMINDMKSGQGQGQRRQRHRHTKASSNKAHSSSYPRVPSRSSNTQRPLLSVQSEGANM TTARQAAAAGASLPPEPEEAGRRRRRQRKAIEEDEDNSSDESAGEEVIVRVDSPSMLTFR QPSSAADR

Transcript Sequence

Transcript ID	Os12t0641100-04
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:27495818:27508326:-1 gene:Os12g0641100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SALT OVERLY SENSITIVE 1 description:Similar to Na+/H+ antiporter. (Os12t0641100-01);Similar to Na+/H+ antiporter. (Os12t0641100-02);Plasma membrane Na+/H+ antiporter, Salt stress (Os12t0641100-03);Plasma membrane Na+/H+ antiporter, Salt tolerance (Os12t0641100-04)
Sequence	AATCCATGGACAATCCCGAGGCGGAGCCTGATGACGCGGTGCTCTTCGTCGGGGTCTCCC TCGTCCTCGGCATCGCCTCCCGCCACCTCCTCCGGGGCACCCGCGTCCCCTACACCGTCG CCCTCCTCGTCCTCGGCGTCGCCCTCGGATCGCTCGAATTTGGCACAAAACATGGCATGG GCAAACTCGGAGCCGGCATTCGTATCTGGGCTAACATTAATCCTGATCTTCTTCTGGCTG TTTTTCTACCCGCTCTTCTTTTTGAAAGTTCCTTTTCCATGGAAATACACCAAATCAAGA AATGTATGGCACAAATGGTGTTACTTGCTGGACCTGGTGTGCTAATATCAACCTTTTTCC TAGGCTCTGCTCTAAAGCTCACTTTTCCATACAACTGGAACTGGAAAACATCATTGTTGC TTGGTGGATTGCTTAGTGCAACTGACCCCGTTGCTGTTGTTGCACTGCTAAAAGAACTTG GCGCAAGTAAAAAGCTTAGTACCATAATTGAGGGAGAATCCTTAATGAATGATGGGACTG CTATTGTTGTGTATCAGTTATTCTATAGGATGGTGCTTGGAAGAACTTTCGATGCAGGAT CAATAATAAAATTCTTGTCAGAAGTTTCACTTGGAGCTGTTGCTCTGGGCCTTGCTTTTG GAATTGCATCAGTACTGTGGCTGGGCTTTATTTTTAATGATACAATCATAGAGATCGCGC TTACTCTTGCTGTCAGCTACATTGCTTTCTTCACTGCACAAGATGCACTGGAGGTCTCTG GTGTTTTGACCGTCATGACACTGGGAATGTTCTATGCCGCTTTTGCAAAAACTGCTTTTA AGGGTGACAGTCAGCAAAGCTTGCATCATTTCTGGGAAATGGTTGCTTATATAGCAAACA CACTTATATTTATACTGAGTGGGGTTGTTATTGCAGATGGAGTACTAGAAAATAATGTCC ATTTCGAGAGGCACGGTGCTTCATGGGGCTTCCTTCTTCTGCTCTATGTATTTGTGCAAA TTTCTCGGATATTAGTTGTTGTTATTTTGTATCCATTGTTGCGCCACTTTGGGTATGGTT TGGACTTGAAAGAAGCCACAATTCTTGTTTGGGCGGGACTGCGAGGGGCTGTTGCTCTGT CTCTATCATTATCTGTTAAGCGTGCTAGTGATGCAGTTCAGACCCATCTGAAACCAGTTG ACGGAACAATGTTTGTGTTCTTCACTGGTGGCATCGTGTTTTTGACATTGATTTTTAATG GTTCTACTACACAATTTTTGTTGCATCTACTTGGAATGGACAGATTAGCAGCAACAAAGC TTCGCATATTGAATTATACAAAATATGAAATGCTAAACAAGGCATTGGAGGCTTTTGGTG ATCTTAGGGATGATGAGGAACTTGGTCCTCCTGCTGATTGGGTTACTGTAAAGAAATATA TCACATGCTTGAACGACTTGGACGATGAGCCTGTGCATCCTCATGCTGTTTCTGACAGAA ATGATCGCATGCATACCATGAACTTAAGGGACATCCGTGTGCGGCTTCTAAATGGTGTCC AAGCTGCTTACTGGGGAATGCTTGAAGAAGGACGAATAACTCAAACCACTGCAAATATTT TAATGAGATCGGTTGATGAAGCTATGGATCTTGTTCCTACCCAAGAATTATGTGACTGGA AGGGTTTGCGGTCCAATGTCCATTTTCCAAATTACTATAGGTTCCTTCAAATGAGCAGGT TGCCACGAAGGCTTATCACTTACTTCACAGTAGAAAGACTGGAGTCAGGATGTTACATCT GTGCTGCATTTCTCCGTGCTCATAGAATCGCAAGACGGCAGCTACATGACTTTCTTGGTG ATAGTGAGGTTGCCAGAATTGTTATTGATGAAAGTAATGCTGAGGGAGAGGAGGCTAGAA AATTCTTGGAAGATGTTCGTGTTACATTCCCTCAGGTGCTTCGTGTGCTGAAGACTCGAC AAGTAACATATTCGGTATTGACCCACTTGAGTGAGTATATTCAAAATCTCCAGAAGACTG GGTTGCTGGAAGAAAAGGAAATGGCCCATCTAGATGATGCTTTGCAGACAGACTTGAAGA AGTTCAAGAGGAATCCACCATTGGTAAAAATGCCAAGAGTCAGTGATCTTTTGAACACTC ATCCGTTAGTTGGTGCACTGCCTGCTGCGATGCGTGATCCTTTATTAAGTAGCACAAAAG AAACAGTAAAAGGACATGGCACAATCCTTTATAGAGAGGGCTCAAGGCCAACTGGTATAT GGCTTGTTTCGATTGGAGTAGTAAAGTGGACAAGTCAGAGATTAAGCAGCAGGCATTCAT TGGATCCAATTTTATCACATGGCAGCACTTTGGGCCTGTATGAGGTGCTGATTGGAAAAC CTTATATCTGTGACATGATTACAGATTCTGTGGTGCACTGCTTCTTCATTGAAGCTGAAA AGATAGAGCAATTGCGTCAATCAGATCCTTCTATTGAGATTTTTCTGTGGCAGGAAAGTG CTCTAGTCGTTGCCAGGCTTTTGCTCCCTATGATGTTTGAGAAAATGGCAACACATGAGC TCAGGGTTCTCATCACTGAAAGATCTACTATGAACATCTACATTAAGGGCGAAGAAATTG AACTTGAGCAGAATTTCATTGGCATCTTACTGGAAGGATTTTTGAAGACCAAGAACCAAA CTTTGATCACACCTCCAGGGTTACTGCTACCACCAAATGCCGACTTGAACTTATTTGGTC TCGAGTCATCAGCTATAAACCGCATTGACTACTGTTATACAGCACCCAGCTATCAGGTGG AGGCTAGAGCAAGGATTTTGTTCGTTGAGATAGGGAGGCCCGAAATAGAGGCGGATCTGC AAAGGAGTGCGTCATTGATATCTCAAACCCTTGAACTGCCTCGGACACAAAGCAAGGAGC ACAGCGGTTTGCTCAGCTGGCCGGAAAGCTTCAGAAAATCCAGGGGAGCTCAGAATGGTG CCAGCTTAACTGAAATCAGAGACCATCCAGCAAGCTTCTCTGCAAGAGCATTGCAGCTGA GCATGTACGGGAGCATGATCAATGACATGAAGTCCGGTCAGGGTCAGGGTCAGAGGAGGC AGAGGCATCGTCACACGAAAGCAAGCTCTAATAAAGCGCACAGCTCGTCGTACCCAAGAG TGCCTTCGAGGTCGTCCAACACGCAGAGGCCCCTGCTGTCTGTGCAGTCCGAGGGTGCCA ACATGACGACGGCAAGGCAGGCTGCTGCTGCTGGTGCTTCTCTGCCGCCGGAGCCGGAGG AGGCAGGACGGCGGCGGCGGCGACAACGCAAGGCAATAGAAGAGGACGAGGACAACTCGA GCGATGAGTCGGCCGGGGAAGAGGTGATTGTCAGAGTCGATTCTCCCAGCATGCTCACCT TCCGTCAGCCCTCCAGCGCTGCTGATCGATGATCAACGTCGCAACCCAAGTAATTGTTGG ACCAGCCAATGGAAATACTCCTCTTATATTTAATACTAATATTTGCAATGCATTTGCTCA TTTCATTCTGTTCTAGCGTATACATATGCATCTTATATTTGCATGCTTGGCTCGTGCGTT TACCTCTAGTACAGTAATAAAGAAGAATCCCTGTTCGTTC