Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0640600-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:27464832:27471667:1 gene:Os12g0640600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotenoid cleavage dioxygenase 1 description:Similar to Carotenoid cleavage dioxygenase (Fragment). (Os12t0640600-01)
Sequence	ATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGC CTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCC TCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCG GCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGG GTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGA ATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAG ACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGAC CTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAA GTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGT AAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGA GACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCT CATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCT CCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATA ACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTC ATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTAC AAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGAC ACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGG GAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAG GTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGA TTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTT CCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTA AACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATC AGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCT GGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAA GATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAAT GTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGA GTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCG TGA

Peptide Sequence

PEP ID	Os12t0640600-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:27464832:27471667:1 gene:Os12g0640600 transcript:Os12t0640600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotenoid cleavage dioxygenase 1 description:Similar to Carotenoid cleavage dioxygenase (Fragment). (Os12t0640600-01)
Sequence	MGGGDGDEVLLLPEPRPRRGLASWALDLLERAAVRLGHDASKPLYWLSGNFAPVHHETPP APALPVRGHLPECLNGEFVRVGPNPKFVPVAGYHWFDGDGMIHAMRIKDGKATYVSRYVK TSRLKQEEYFGGAKFMKIGDLKGFYGLFMVQMQQLRKKLKVLDFTYGHGTANTALIYHHG KLMALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTDEMFAFGYSHEP PYCTYRVITKDGAMLDPVPITIPESVMMHDFAITENYSIFMDLPLLFRPKEMVKNGEFIY KFDPTKKARFGILQRYEKDDTNIRWFELPNCFIFHNANAWEEGDEVILITCRLENPDLDK VNGYQSDNLENFGNELYEMRFNMKTGAASQKQLSVSAVDFPRINESYTGRKQRYVYCAIL NSIAKVAGIIKFDLHAEPEISGMKQLEVGGNVRGIFDLGPGRFGSEAIFVPREPGVSGEE DDGYLIFFVHDENTGKSEVNVIDAKTMSADPVAVVELPSRVPYGFHAFFINEEQLAKQSA

Transcript Sequence

Transcript ID	Os12t0640600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:27464832:27471667:1 gene:Os12g0640600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotenoid cleavage dioxygenase 1 description:Similar to Carotenoid cleavage dioxygenase (Fragment). (Os12t0640600-01)
Sequence	GTGCAGTAGTGTAAGCAGAAGCAGACGCACCAAAAGAGACGAACACTACTACTAGTATAG TATTCCCCATTGGATTCCATCCGCCGGCCGGCCTGCTGCCTGCCTGCCATTGATAGATTC CATCGTCGTCGTAGGATAGAGAGTACTAGTTTGCAATTCAATTCAATCCCCCATACCCAT AGGCCATAGGATAGGAGTATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAG CCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTC CGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTC CACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTG AATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCAT TGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTAT GTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAG TTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAA CTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCA CTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTT AAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTG AAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTT GGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATG CTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACA GAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAG AATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAA CGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTC CACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAG AATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAAT GAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCT GTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTAT GTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTA CATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGA ATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCC GGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACA GGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTT GTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAA CTGGCAAAACAATCAGCGTGACAAGTGACAGCGGACTGCATACATCCTACAGTAACTTGT TATATTTTAGTCGGAGGGAAATGATATATACATATGAATGTACATGTGTATCCTCTTACT CGGGGAAATAATTGGCTTAAGGTACATATATGTTTAACTCGAATTGAACAATTACTCCTA TATTAATTACTTATTAAGGGAGGGTTATTAT