Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0638900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:27398757:27403111:-1 gene:Os12g0638900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0638900-01);Similar to predicted protein. (Os12t0638900-02)
Sequence

ATGTTGAGGGCAAAGCAACTCGGCACGCTAACCCAGTGTGCACGGTCCTTCTACGTTAAT
GGGTCAAGGTGTGGTAGCACTGATGGAGCTTCATGCACATGCCCTGAAGATGAAACTTCT
GCTCCAAAAAGGCAGACGGCTAATGGTATCGAGCAGAAGTTTCATTCAACTCGCAGACCC
TCTGTAAAGGCTCAAACTCCATCTGTACAACATGTTGTTGGATCCATTGGTCGGGCCACT
GGTTACCCTGCTCCAGCTGTTCATATTGTTCCTTCCAACTCATCTCAAGAGACAGAGCCA
GCATCTGGCAACACTAGCAACCACCCTCGAACTCCTCAGGTGCTAGGAAATGATTATGTA
CAGCCTTCTAAGCAGACCGCCAGAAGCATTTCTCATTCTGCAATTGCAGGAGCTGGTGTG
TACACTGAGTTAGTAAACCTCAAGTCCACATCAAATAATGGAGGCACCAATCAAGCTTCA
CAGATGGCCACTAGCTATTCTTACCAGCCCTTGTCGGATGCCCAGCCTTCTAATATCAAG
TCACACAACCAGCATAGTCTTCCTGAGGCAAAGATGCCTTATAATCCTTCCGTGCAAAAT
AATCTTGGGAAGGGTGTATCAAGATCTGGCTATGCAAAATCAAACCAGAGTTTTTCAGGA
CCTCCTGCTATGGTTGCTAATTCACCATCGCAAATAAAGAATCAAAGACATCCTGGTCAG
CGCCACACAAATTATCATTCTAACAATTTCAGTACAGATGCTAGGTGGGATGAAGTTCAA
ACCCAAAACTTGTCAGCTCCAGCTATGTATACTGGTTCTGGTCACAAATCTCAGGCCCTT
GCGGGAACAATAAAGAGTCATGGTGGAGGACCTCAGTCTAACTTAAGATCATTGAAGTCA
TTGCGCTCAGTTGAACAGTACTACCATACACTGCAGCAAATGAAATGGGGTCCTATGACG
GAACACGTTCTGGATAATCTCCATTGCAAGATAGATGCATTCCAGGCAAACCAAGTACTC
AAGCTGCTTCATGACCACACCATTGCACTTGGTTTCTTCCAGTGGTTAAAGCGGCAACCA
GGTTTCAAGCATGATGGTCATAGCTACACAACCATGATAGGCATCCTTGGACAAGCCAGG
CAATTTGGTACGATGAGGAAACTTCTTGATGAGATGAACAGTGTTCACTGCAAACCAACT
GTTGTAACATACAACAGAATAATACATGCATATGGTCGTGCAAATTATCTAAGAGAGGCT
GTTAAAGTATTCGAGGAGATGCAGAAAGCCGGTTATGAGCCAGATCGGGTTACATATTGT
ACATTGATTGATATCCATGCTAAAGGTGGATACCTGGAATTTGCAATGGATTTATATACC
AGGATGCAAGAAGTAGGGCTGTCACCAGATACTTTCACGTACAGTGCCATGGTTAATTGC
CTTGGAAAAGGTGGTCACCTGGCAGCTGCTTATAAGCTTTTCTGTGAGATGGTTGAAAAT
GGCTGCACACCTAACCTAGTTACATACAACATAATGATTGCTCTTCAGGCCAAAGCAAGA
AATTATGAAAATGTTGTGAAGCTGTACAAGGACATGCAGGTTGCCGGGTTTCGTCCTGAC
AAAATAACATACAGTATTGTCATGGAAGTTCTTGGTCATTGTGGTCATCTGGATGAGGCT
GAGGCTGTGTTCATTGAGATGAGGCATGACTGGGCTCCTGATGAGCCTGTATATGGTCTT
TTGGTGGACCTCTGGGGCAAAGCTGGCAATGTTGACAAGGCACTAGGATGGTATCATGCA
ATGCTTCAGGATGGTTTGCAGCCCAATGTGCCGACCTGCAATTCCCTACTGAGTGCTTTT
CTTAAGATAAACAGGTTCCAAGATGCCTACAGCGTGCTCCAAAACATGCTTGCTCAGGGG
CTCGTTCCATCTTTGCAGACCTACACCTTGCTGCTCAGTTGTTGTACTGAGGCTCAAGCA
CAGATGGGTTTATGCTGCCAGCTCATGGCGATCACTGGACACCCTGCCCACATGTTCTTG
TTATATTTGCCCGATGCAGAACCTGGCGGCCAGAATGTGAGGGATCACACCAGATATTTC
TTGGACATGATGCACAGTGAGGACAGAGAGAGTAAAAGGGGTTTAATGGATGCTGTCATA
GATTTCCTACACAAGTCCGGCCTCAAGGAGGAGGCTGGCTTCATATGGGAGGTTGCTGCC
CAGAGGAATGTGTACCCGGATTCTGTGAGGGAGAAGGACCCATCATATTGGCTCATCAAC
TTACACCTGATGTCGGAGGGCACTGCAGTGACTGCGCTGTCAAGGACACTGGCTTGGTTC
CACAGGCAGATTCTGACAATGGGCAAATGCCCTGAAAGAATTGACATTGTCACTGGCTGG
GGCAGGAGGAGCAGGGTAACCGGGTCTTCCTTGGTTAGACAGTCAGTTCAGAAGCTGCTA
CATCTCTTCGAATTCCCGTTCGTCACCACGCGAGGCAATACTGGATGCTTCGTTGGATGT
GGGGAGCCACTGAATAGGTGGCTGCACAATCCTTATGTTGAGCGCATGCATCTGCTCTAG

Peptide Sequence

PEP ID

Os12t0638900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:27398757:27403111:-1 gene:Os12g0638900 transcript:Os12t0638900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0638900-01);Similar to predicted protein. (Os12t0638900-02)
Sequence

MLRAKQLGTLTQCARSFYVNGSRCGSTDGASCTCPEDETSAPKRQTANGIEQKFHSTRRP
SVKAQTPSVQHVVGSIGRATGYPAPAVHIVPSNSSQETEPASGNTSNHPRTPQVLGNDYV
QPSKQTARSISHSAIAGAGVYTELVNLKSTSNNGGTNQASQMATSYSYQPLSDAQPSNIK
SHNQHSLPEAKMPYNPSVQNNLGKGVSRSGYAKSNQSFSGPPAMVANSPSQIKNQRHPGQ
RHTNYHSNNFSTDARWDEVQTQNLSAPAMYTGSGHKSQALAGTIKSHGGGPQSNLRSLKS
LRSVEQYYHTLQQMKWGPMTEHVLDNLHCKIDAFQANQVLKLLHDHTIALGFFQWLKRQP
GFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREA
VKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNC
LGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPD
KITYSIVMEVLGHCGHLDEAEAVFIEMRHDWAPDEPVYGLLVDLWGKAGNVDKALGWYHA
MLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCTEAQA
QMGLCCQLMAITGHPAHMFLLYLPDAEPGGQNVRDHTRYFLDMMHSEDRESKRGLMDAVI
DFLHKSGLKEEAGFIWEVAAQRNVYPDSVREKDPSYWLINLHLMSEGTAVTALSRTLAWF
HRQILTMGKCPERIDIVTGWGRRSRVTGSSLVRQSVQKLLHLFEFPFVTTRGNTGCFVGC
GEPLNRWLHNPYVERMHLL

Transcript Sequence

Transcript ID

Os12t0638900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:27398757:27403111:-1 gene:Os12g0638900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os12t0638900-01);Similar to predicted protein. (Os12t0638900-02)
Sequence

GTTGTTGTTGCTCCTCCTCCTCACGCCGCTCCTCCTCTGCTCTCCATGTCTCCTTGGAAC
CTAGTACTACTAGCTAGGTACTACTCCTAGTAGAAAGGACGAGGAAGAGGCAGAAGAGGG
GTTGCCGAACGCCGCCGCCGTCCAGCTGGGTCTCCCGCCGTGCGATTGCTGGGTGGCGCG
GCTGGCGTTGGAGCCGAGAGCGCGCCGCCGCCGGCTGGAACGACCAAAGAGGCCCCTTCG
GTCGTTCCTCCGTCTCCGGTACCCGATTCGAGGTTTACCAGTGAGGGGCCATATGGAGTT
CAGTGGAGGCTAGAAGTTCGCACTGACATTATCAAAAGTTCTAGCTTGATTTATTAACCA
ACTAACCATTCATGTTGAGGGCAAAGCAACTCGGCACGCTAACCCAGTGTGCACGGTCCT
TCTACGTTAATGGGTCAAGGTGTGGTAGCACTGATGGAGCTTCATGCACATGCCCTGAAG
ATGAAACTTCTGCTCCAAAAAGGCAGACGGCTAATGGTATCGAGCAGAAGTTTCATTCAA
CTCGCAGACCCTCTGTAAAGGCTCAAACTCCATCTGTACAACATGTTGTTGGATCCATTG
GTCGGGCCACTGGTTACCCTGCTCCAGCTGTTCATATTGTTCCTTCCAACTCATCTCAAG
AGACAGAGCCAGCATCTGGCAACACTAGCAACCACCCTCGAACTCCTCAGGTGCTAGGAA
ATGATTATGTACAGCCTTCTAAGCAGACCGCCAGAAGCATTTCTCATTCTGCAATTGCAG
GAGCTGGTGTGTACACTGAGTTAGTAAACCTCAAGTCCACATCAAATAATGGAGGCACCA
ATCAAGCTTCACAGATGGCCACTAGCTATTCTTACCAGCCCTTGTCGGATGCCCAGCCTT
CTAATATCAAGTCACACAACCAGCATAGTCTTCCTGAGGCAAAGATGCCTTATAATCCTT
CCGTGCAAAATAATCTTGGGAAGGGTGTATCAAGATCTGGCTATGCAAAATCAAACCAGA
GTTTTTCAGGACCTCCTGCTATGGTTGCTAATTCACCATCGCAAATAAAGAATCAAAGAC
ATCCTGGTCAGCGCCACACAAATTATCATTCTAACAATTTCAGTACAGATGCTAGGTGGG
ATGAAGTTCAAACCCAAAACTTGTCAGCTCCAGCTATGTATACTGGTTCTGGTCACAAAT
CTCAGGCCCTTGCGGGAACAATAAAGAGTCATGGTGGAGGACCTCAGTCTAACTTAAGAT
CATTGAAGTCATTGCGCTCAGTTGAACAGTACTACCATACACTGCAGCAAATGAAATGGG
GTCCTATGACGGAACACGTTCTGGATAATCTCCATTGCAAGATAGATGCATTCCAGGCAA
ACCAAGTACTCAAGCTGCTTCATGACCACACCATTGCACTTGGTTTCTTCCAGTGGTTAA
AGCGGCAACCAGGTTTCAAGCATGATGGTCATAGCTACACAACCATGATAGGCATCCTTG
GACAAGCCAGGCAATTTGGTACGATGAGGAAACTTCTTGATGAGATGAACAGTGTTCACT
GCAAACCAACTGTTGTAACATACAACAGAATAATACATGCATATGGTCGTGCAAATTATC
TAAGAGAGGCTGTTAAAGTATTCGAGGAGATGCAGAAAGCCGGTTATGAGCCAGATCGGG
TTACATATTGTACATTGATTGATATCCATGCTAAAGGTGGATACCTGGAATTTGCAATGG
ATTTATATACCAGGATGCAAGAAGTAGGGCTGTCACCAGATACTTTCACGTACAGTGCCA
TGGTTAATTGCCTTGGAAAAGGTGGTCACCTGGCAGCTGCTTATAAGCTTTTCTGTGAGA
TGGTTGAAAATGGCTGCACACCTAACCTAGTTACATACAACATAATGATTGCTCTTCAGG
CCAAAGCAAGAAATTATGAAAATGTTGTGAAGCTGTACAAGGACATGCAGGTTGCCGGGT
TTCGTCCTGACAAAATAACATACAGTATTGTCATGGAAGTTCTTGGTCATTGTGGTCATC
TGGATGAGGCTGAGGCTGTGTTCATTGAGATGAGGCATGACTGGGCTCCTGATGAGCCTG
TATATGGTCTTTTGGTGGACCTCTGGGGCAAAGCTGGCAATGTTGACAAGGCACTAGGAT
GGTATCATGCAATGCTTCAGGATGGTTTGCAGCCCAATGTGCCGACCTGCAATTCCCTAC
TGAGTGCTTTTCTTAAGATAAACAGGTTCCAAGATGCCTACAGCGTGCTCCAAAACATGC
TTGCTCAGGGGCTCGTTCCATCTTTGCAGACCTACACCTTGCTGCTCAGTTGTTGTACTG
AGGCTCAAGCACAGATGGGTTTATGCTGCCAGCTCATGGCGATCACTGGACACCCTGCCC
ACATGTTCTTGTTATATTTGCCCGATGCAGAACCTGGCGGCCAGAATGTGAGGGATCACA
CCAGATATTTCTTGGACATGATGCACAGTGAGGACAGAGAGAGTAAAAGGGGTTTAATGG
ATGCTGTCATAGATTTCCTACACAAGTCCGGCCTCAAGGAGGAGGCTGGCTTCATATGGG
AGGTTGCTGCCCAGAGGAATGTGTACCCGGATTCTGTGAGGGAGAAGGACCCATCATATT
GGCTCATCAACTTACACCTGATGTCGGAGGGCACTGCAGTGACTGCGCTGTCAAGGACAC
TGGCTTGGTTCCACAGGCAGATTCTGACAATGGGCAAATGCCCTGAAAGAATTGACATTG
TCACTGGCTGGGGCAGGAGGAGCAGGGTAACCGGGTCTTCCTTGGTTAGACAGTCAGTTC
AGAAGCTGCTACATCTCTTCGAATTCCCGTTCGTCACCACGCGAGGCAATACTGGATGCT
TCGTTGGATGTGGGGAGCCACTGAATAGGTGGCTGCACAATCCTTATGTTGAGCGCATGC
ATCTGCTCTAGAGACTCTAGTGACTAGTGAGGTTATTCCAGTCAGAAATAAGGGACTCAT
CTAAACAGGGTGCAGTTTTGGGGGAAGAATGATGATCTGGTGCATCTGTCTAGATTGGTC
TGTAGTCTAAGTTGTAGTTCTCTTTGATTCCTTATGCTTTGAAACCTCTTATTTGTGATA
ACATTTAGAGATGGCATTGGTGCATTTTAAGTG