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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0636000-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:27263777:27265844:1 gene:Os12g0636000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING DOMAIN-CONTAINING PROTEIN 5 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0636000-01)
Sequence

ATGGCAGCCAATGTTGGGGAATCCACAAGTGGCAGCAGCAGCGGCGGTGCCGATTCTGGG
GGAAGCTTCGAGTGCAACATATGCTTTGAGCTTCCGCAGGAGCCTATTGTCACGCTCTGT
GGCCACCTCTTCTGCTGGCCATGCCTCTACAAGTGGCTGCACATCCACTCGCATTCACCT
GAGTGCCCGGTCTGCAAGGCTGTTGTCGAGGAGGATAAGCTTGTCCCCCTCTATGGCCGT
GGTAAGGACCGTGTTGACCCAAGGTCAAAGAACGTCCCTGGGGCTGACATTCCTAATCGC
CCAGCTGGACAGAGGCCTGCCACGGCTCCGCAGGCCAATCCTAACACCCACTTCCCCAAT
GCCAACCCCAACCCTTGGTTCATGGGTGGAGGCATCCCACTAGCCAATGCACGGTGGGGG
AATTACACCTTCTCGGCGGCATTTGGGGGTTTGTTCCCCCTGCTCAGCTTCCAAGTCCAT
GGGTTCCCAGATGCAACCGCCTATGGGCAGCCTGCTGGTTTTCCCTACGGATATGGACAC
GGCCACGGTCACGGTCATGGGCACGCGTTCCACGGCGGACATGCCCATGCTGCTGCTGCT
CCCCGCCATGGACCGCCTGGGCAACAACAGCAGGCGGATGTGTACCTGAAGGCGCTTCTC
ATCCTGGTTGGTTTTCTTGTGATTGCAAGCCTCATCACATTCTAG

Peptide Sequence

PEP ID

Os12t0636000-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:27263777:27265844:1 gene:Os12g0636000 transcript:Os12t0636000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING DOMAIN-CONTAINING PROTEIN 5 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0636000-01)
Sequence

MAANVGESTSGSSSGGADSGGSFECNICFELPQEPIVTLCGHLFCWPCLYKWLHIHSHSP
ECPVCKAVVEEDKLVPLYGRGKDRVDPRSKNVPGADIPNRPAGQRPATAPQANPNTHFPN
ANPNPWFMGGGIPLANARWGNYTFSAAFGGLFPLLSFQVHGFPDATAYGQPAGFPYGYGH
GHGHGHGHAFHGGHAHAAAAPRHGPPGQQQQADVYLKALLILVGFLVIASLITF

Transcript Sequence

Transcript ID

Os12t0636000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:27263777:27265844:1 gene:Os12g0636000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING DOMAIN-CONTAINING PROTEIN 5 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0636000-01)
Sequence

GTCTTCCTCTGCGGCGCACGCAGGCGGCGAATCCTCCTCCGTCGACGCGACTCCTCCTCC
GCCGCCCGCCGCTCATCTCATCCCACTATGGCAGCCAATGTTGGGGAATCCACAAGTGGC
AGCAGCAGCGGCGGTGCCGATTCTGGGGGAAGCTTCGAGTGCAACATATGCTTTGAGCTT
CCGCAGGAGCCTATTGTCACGCTCTGTGGCCACCTCTTCTGCTGGCCATGCCTCTACAAG
TGGCTGCACATCCACTCGCATTCACCTGAGTGCCCGGTCTGCAAGGCTGTTGTCGAGGAG
GATAAGCTTGTCCCCCTCTATGGCCGTGGTAAGGACCGTGTTGACCCAAGGTCAAAGAAC
GTCCCTGGGGCTGACATTCCTAATCGCCCAGCTGGACAGAGGCCTGCCACGGCTCCGCAG
GCCAATCCTAACACCCACTTCCCCAATGCCAACCCCAACCCTTGGTTCATGGGTGGAGGC
ATCCCACTAGCCAATGCACGGTGGGGGAATTACACCTTCTCGGCGGCATTTGGGGGTTTG
TTCCCCCTGCTCAGCTTCCAAGTCCATGGGTTCCCAGATGCAACCGCCTATGGGCAGCCT
GCTGGTTTTCCCTACGGATATGGACACGGCCACGGTCACGGTCATGGGCACGCGTTCCAC
GGCGGACATGCCCATGCTGCTGCTGCTCCCCGCCATGGACCGCCTGGGCAACAACAGCAG
GCGGATGTGTACCTGAAGGCGCTTCTCATCCTGGTTGGTTTTCTTGTGATTGCAAGCCTC
ATCACATTCTAGGATTGTGCCATCATATTGCTGTGCTTGTAATAAGAGGAATGATTTCCC
GAGTTGCTTTCTGATGTTGTGCATTACCTTGCCTCCACACACGACCCAGTCTGAATCAAG
TGGTTCTTTTGCGCAAAGTGTTGATAGAATTCTTGTATATACGAAATAGATGTGGTCGTG
TGGAGCATATGTGTACTGTGGTTCATGAATAACATGGAAGCTCTGTCTGAATGAACTAGA
GCAATGATACTTATATTGTGTTTTTGATATGATGATGCTCAGAATGAGCAGGCTATGCAA
TTGTTTGGAGC