Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0634900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:27213523:27219059:-1 gene:Os12g0634900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat domain containing protein. (Os12t0634900-01)
Sequence

CCTAGCCAGGACGGCATCATGTCGCTGCCCGACCTCTTCGAGAAGCTTCTCGGCGACGAT
CAGGACAGCTGGCCCGCGGAGGCCAACTTGCTCCTCGCCGCCCACGACGGCAACCTCCGC
CGCATCAAGGAGATCGCCGCGACGCTGGACGACGACGGGGAGGGGATCGCGGCCACCGTG
GCGCGCACGGCCTTCCACGGCATGAACGCGCTGCACGCCGCCAGAAGCCTGCACGTCTAC
CGCTACTTGCTCGAGGTGGCCAACATGGACGTCAACAAGCCGGACACCACTCCAGGTAGG
AAGACTCCCCTCGAGCGAGCCATTGCCGGTGGGGACCTGCCCTCTGTCAGGTATCTCATT
GATCATGGTGCTGATATCCATCATGAACGTGAAGGAAACATCACTTTTCTTCATTCAGCT
GCAAAGAAAGGGAGGACTGAAATAGTAAAATTGCTGCTTTCTAGAGGAGCTCATGTTGAT
GGCAAATCAGATCATGGGACACCTCTGCATTTTGCTGCTATTAAAGGATATGAAAGTACT
GTGAAGATTTTGTTGGAGCACCAAGCAGATCCCAACAAGGTTATGCCTTCTTCTCAAGCA
ACACCTTTATCTGCGGCGTTATTCACTACTTCCTTACCTTGTGTGAAGCTATTGATCCAG
GCTGGAGCTGATGTAAATGCTACAAACAACCCCCTGGCGAGAGCTGCAGGGAGTGGATTA
ACTGAAGCTATAAAGTTGTTGTTGAAGGCTGGAGCAAACCCAAATTGTCCTGACACGCAT
GGTAGAATGCCAATAGAGCTGGCTGCTGTGTATGGTACAAGGGAAGATGTTGAGATTCTA
TTTCCTTTGACCAACCCAATTCCAACTGTTGCTGACTGGAGCGTTGATGGGGTAATTACT
TATGCCAATCTGGAACGCAAGAAGCTAGAGGATGATGATTACGTTAACACGAAAATGTCT
GACCTGAAACAAAAAGGGAATGAAGCATTTGATGAGCAGGATTATGAAAAAGCATCAGTG
TGGTACACACAGGCACTGGAAGTTGATCCTTGTGATGCCACAACTCTTCTAAAGAGGTGT
CTTTGCTGGCTTCGCATGGGTGAGGGAAAAAAGGCTGTGAAAGATGCAACCACATGCGCA
AAACATCACCCGAAGTTGTCGGAGGCCTACCATCGGCTAGGAGAAGCTCTAATGCTTGAG
AAGGATTATGAGAAAGCTTGCGTGGCGTTGACCCATGGTATAGAGTTGGATCCTGAAAGT
GATGAGATGGACAAACTGTTCTGGGAGGCGATGGACCTGAAGAACTGA

Peptide Sequence

PEP ID

Os12t0634900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:27213523:27219059:-1 gene:Os12g0634900 transcript:Os12t0634900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat domain containing protein. (Os12t0634900-01)
Sequence

PSQDGIMSLPDLFEKLLGDDQDSWPAEANLLLAAHDGNLRRIKEIAATLDDDGEGIAATV
ARTAFHGMNALHAARSLHVYRYLLEVANMDVNKPDTTPGRKTPLERAIAGGDLPSVRYLI
DHGADIHHEREGNITFLHSAAKKGRTEIVKLLLSRGAHVDGKSDHGTPLHFAAIKGYEST
VKILLEHQADPNKVMPSSQATPLSAALFTTSLPCVKLLIQAGADVNATNNPLARAAGSGL
TEAIKLLLKAGANPNCPDTHGRMPIELAAVYGTREDVEILFPLTNPIPTVADWSVDGVIT
YANLERKKLEDDDYVNTKMSDLKQKGNEAFDEQDYEKASVWYTQALEVDPCDATTLLKRC
LCWLRMGEGKKAVKDATTCAKHHPKLSEAYHRLGEALMLEKDYEKACVALTHGIELDPES
DEMDKLFWEAMDLKN

Transcript Sequence

Transcript ID

Os12t0634900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:27213523:27219059:-1 gene:Os12g0634900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat domain containing protein. (Os12t0634900-01)
Sequence

CTTTCTCTGCTCTCTCTGCACTTGCAGAGTTGCAGCAGAGAAGCGCTTCTTCTTCTTCTT
CTTCTTCTTCTTCAATTCTTGGACCATTCTTCCCTTCTCTCCTCCTTTCCCCAACCCAAA
CACAACCCAGCCGCAGCAGCAACAAACGAAACCCTAGCCTAGCCAGGACGGCATCATGTC
GCTGCCCGACCTCTTCGAGAAGCTTCTCGGCGACGATCAGGACAGCTGGCCCGCGGAGGC
CAACTTGCTCCTCGCCGCCCACGACGGCAACCTCCGCCGCATCAAGGAGATCGCCGCGAC
GCTGGACGACGACGGGGAGGGGATCGCGGCCACCGTGGCGCGCACGGCCTTCCACGGCAT
GAACGCGCTGCACGCCGCCAGAAGCCTGCACGTCTACCGCTACTTGCTCGAGGTGGCCAA
CATGGACGTCAACAAGCCGGACACCACTCCAGGTAGGAAGACTCCCCTCGAGCGAGCCAT
TGCCGGTGGGGACCTGCCCTCTGTCAGGTATCTCATTGATCATGGTGCTGATATCCATCA
TGAACGTGAAGGAAACATCACTTTTCTTCATTCAGCTGCAAAGAAAGGGAGGACTGAAAT
AGTAAAATTGCTGCTTTCTAGAGGAGCTCATGTTGATGGCAAATCAGATCATGGGACACC
TCTGCATTTTGCTGCTATTAAAGGATATGAAAGTACTGTGAAGATTTTGTTGGAGCACCA
AGCAGATCCCAACAAGGTTATGCCTTCTTCTCAAGCAACACCTTTATCTGCGGCGTTATT
CACTACTTCCTTACCTTGTGTGAAGCTATTGATCCAGGCTGGAGCTGATGTAAATGCTAC
AAACAACCCCCTGGCGAGAGCTGCAGGGAGTGGATTAACTGAAGCTATAAAGTTGTTGTT
GAAGGCTGGAGCAAACCCAAATTGTCCTGACACGCATGGTAGAATGCCAATAGAGCTGGC
TGCTGTGTATGGTACAAGGGAAGATGTTGAGATTCTATTTCCTTTGACCAACCCAATTCC
AACTGTTGCTGACTGGAGCGTTGATGGGGTAATTACTTATGCCAATCTGGAACGCAAGAA
GCTAGAGGATGATGATTACGTTAACACGAAAATGTCTGACCTGAAACAAAAAGGGAATGA
AGCATTTGATGAGCAGGATTATGAAAAAGCATCAGTGTGGTACACACAGGCACTGGAAGT
TGATCCTTGTGATGCCACAACTCTTCTAAAGAGGTGTCTTTGCTGGCTTCGCATGGGTGA
GGGAAAAAAGGCTGTGAAAGATGCAACCACATGCGCAAAACATCACCCGAAGTTGTCGGA
GGCCTACCATCGGCTAGGAGAAGCTCTAATGCTTGAGAAGGATTATGAGAAAGCTTGCGT
GGCGTTGACCCATGGTATAGAGTTGGATCCTGAAAGTGATGAGATGGACAAACTGTTCTG
GGAGGCGATGGACCTGAAGAACTGAGTAATGCCGAGTGACCCGAAGCCCTTTTTTGTTGG
TTTAGAGACAGTTTAACTAGTAGCTCAGCTGCAATTTTGTGCATATGCAGTACTAGTACT
TGGCATTAGGCTTGAATTCATGGTGGGAGTATGGAGAACGGCGTCTTCTTCGGAAGAATT
AGAACTGAAGCATAGGTTAATGGCAACTTTGACATCCTGTTTGAGATATGGATTCTTACA
ACATTCAGCCCAGACTGTCCAGTAAGCTTGTGGTGATTTTAGCATGCGAGACGCAGGAAT
GATGGCTTTTATTTGCTCCAGATGGAGAAGAAATGTTGTTGGAATGATGAACTAAATGCT
AATTCTTCCTTGTGAT