Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0633600-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:27154499:27160415:-1 gene:Os12g0633600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.1 description:Protein of unknown function DUF221 domain containing protein. (Os12t0633600-01)
Sequence	ATGAAAATCAGCGGACTTCTGACCTCTGCTGGCATCAATATCGCTCTTTCTGTGCTGTTT ATATCGCTCTATTCTGTTCTGAGGAAGCAGCCAGCCAATGTCAGGGTCTACTTTGGGAGG AGGATTGCCGAGGAGCATAATCGGCTCCGAGAAGCTTTTATCTTGGAGAGATTTGTACCA TCTACTGGCTGGATAGTAAAAGCCCTGCAGTGTACCGAGGAAGAGATCTTGGCTGCTGCT GGGCTAGATGCTGTTGTTTTCAATAGAATTCTAGTATTCAGCTTACGCATCTTCTCTCTA GCTGCCATTCTGTGTGTGTTTGGAATTCTACCACTGAACTACTTTGGGCAAGATATACAT CATGTTCGGATTCCTTCAGAATCATTGGATATCTTTACAATTGGGAATGTGAAAGTGAGA TCAAGATGGCTTTGGGTCCATTGTGTAGCCTTGTACATAATATCAGGAGTAGCTTGCATT CTCCTATATCTTGAGTACAAGCACATTGCTAGGCTGAGGCTCCGTCATCTTACTTGTGCA ATGCCCAATCCAAGCCATTTTACTGTCCTTGTTCGTGGAATACCAAAGGAAACCAAAGAA TCATGCAGTAATGCTATTGATGATTTCTTCACCAAGTACCATGGATCAAGCTACCTGTTC CATCAAGTTGTTTACAAAGTTGGAAAAGTTCAGAAGATAATGACTGGTGCTAAGAAGGCA TACAGGAAATTCAAACATTTTACAGACAGCACTATTGATCAGAGGTGTCGAGCAATTTCA TACCGGTGCTGTCTGTGCGGAGCCTCATCTAATTCTTTCCAGCTGTTGGCAACTGGGCTT GAGCAGAATCAGGGGAAATCTGACCTTCAAGATTCCAGCTTGAAACTAGATGATCAGGAA TGTGCAGCTGCTTTTGTATATTTCAGAACTCGGTATGCTGCTCTTGTTGCCTCAGAAATA CTCCAAACATCTAACCCTATGAAATGGGTTACTGATCTAGCTCCAGAACCAGATGATGTG TATTGGTCAAATCTTTGGCTACCTTATAAGCAGCTTTGGATTCGCCGAATAGCTACGCTC CTTGGTTCAATTGTTTTTATGTTATTCTTTCTGATACCAGTGACATTTATACAAGGACTA TCTCAGCTAGAGCAGTTGCAGCAGAGGCTTCCTTTCCTGAAGGGGATACTGGAGAAGAAA TACATGAGCCAGCTTGTAACTGGGTACCTTCCCAGTGTCATACTGCAAATATTTTTATAT GCCGTTGCACCGATAATGATATTATTTTCTACATTAGAGGGGCCTATATCTCACAGTGAA AGGAAGAGGAGTGCTTGCTGTAAAGTGCTGTACTTCACTGTTTGGAACATATTCTTTGGA AATGTACTATCTGGTACTGTCATAAGCCAATTGAATGTGTTATCAAGCCCAAAGGACATC CCTGTCCAGCTTGCTAGAGCTATACCTGTCCAGGCTACCTTCTTTATCACCTATGTTCTG ACATCAGGATGGGCCAGTTTATCATCTGAACTTATGCAATTATTTGGTTTAATATGGAAC TTTGTGAGGAAATATATTCTACGTATGCCAGAAGACACAGAGTTTGTTCCCTCATTCCCA TATCACACAGAAGTGCCAAAAGTTTTGCTGTTCGGACTACTGGGCTTCACATGCTCTGTA CTGGCACCTTTGATCTTACCTTTTCTGTTAGTGTACTTCTTCCTTGGTTACATCGTGTAC CGCAATCAGTTGCTCAATGTTTACCGCACAAGATATGACACAGGGGGTTTGTACTGGCCA ATCGCACACAACGCAGTGATATTCTCTCTCGTGCTCACACAGATTATCTGCCTTGGTGTA TTTGGCCTGAAAGAATCACCAGTAGCTGCAGGCTTCACCATACCTCTTATCATCCTCACT CTGTTATTCAATCAGTATTGCAGAAATCGACTTCTCCCATTATTCAGAACTACCCCAGCA CAGGATTTAATTGACATGGACAGGGAAGACGAACGGTCAGGAAGAATGGATGAAATTCAC CACCGGCTTCATTCTGCCTATTGTCAGTTCCACGACACTGAAGATATACCCTTGGAGAAA ATTCAGACTGTCGGGAGCGATGAGGAACAAGGGTGTAGCTCTGATAAGTCGAATGGAAAA GAAAGCTTCGAGGAACCCAGAGCGGAGTTGTCTCACCCAACACTGAATGGACTCCCAGTT AGCCGTCTTCGGCATGCTGTGAAGTCGATTACTTTCCTTGTCAGATTGCAGAAAAGAGGT TTGTCAGAATAG

Peptide Sequence

PEP ID	Os12t0633600-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:27154499:27160415:-1 gene:Os12g0633600 transcript:Os12t0633600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.1 description:Protein of unknown function DUF221 domain containing protein. (Os12t0633600-01)
Sequence	MKISGLLTSAGINIALSVLFISLYSVLRKQPANVRVYFGRRIAEEHNRLREAFILERFVP STGWIVKALQCTEEEILAAAGLDAVVFNRILVFSLRIFSLAAILCVFGILPLNYFGQDIH HVRIPSESLDIFTIGNVKVRSRWLWVHCVALYIISGVACILLYLEYKHIARLRLRHLTCA MPNPSHFTVLVRGIPKETKESCSNAIDDFFTKYHGSSYLFHQVVYKVGKVQKIMTGAKKA YRKFKHFTDSTIDQRCRAISYRCCLCGASSNSFQLLATGLEQNQGKSDLQDSSLKLDDQE CAAAFVYFRTRYAALVASEILQTSNPMKWVTDLAPEPDDVYWSNLWLPYKQLWIRRIATL LGSIVFMLFFLIPVTFIQGLSQLEQLQQRLPFLKGILEKKYMSQLVTGYLPSVILQIFLY AVAPIMILFSTLEGPISHSERKRSACCKVLYFTVWNIFFGNVLSGTVISQLNVLSSPKDI PVQLARAIPVQATFFITYVLTSGWASLSSELMQLFGLIWNFVRKYILRMPEDTEFVPSFP YHTEVPKVLLFGLLGFTCSVLAPLILPFLLVYFFLGYIVYRNQLLNVYRTRYDTGGLYWP IAHNAVIFSLVLTQIICLGVFGLKESPVAAGFTIPLIILTLLFNQYCRNRLLPLFRTTPA QDLIDMDREDERSGRMDEIHHRLHSAYCQFHDTEDIPLEKIQTVGSDEEQGCSSDKSNGK ESFEEPRAELSHPTLNGLPVSRLRHAVKSITFLVRLQKRGLSE

Transcript Sequence

Transcript ID	Os12t0633600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:27154499:27160415:-1 gene:Os12g0633600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.1 description:Protein of unknown function DUF221 domain containing protein. (Os12t0633600-01)
Sequence	ATTTGATTTTGCAATAACTCCTGGGGGCTTCTTCCCTTCCACTCTCGTCTCGTACTCTCT CCAAACCCAAATCAAAACCAAACCAAAATCGAAACCAAATCGAAAAAGCGAGAGAGAGAG AGAGGAAAAAGTTTGGATTCATCATCCCCTTCTTCTTCTTCCTCCTCTCGCCTCGCCTCG TCTCGTCTGCTCCAATCCAGTCCGCATCTCCCCGCCATTGCCGCCGCCGCGGCCGCGCTT AATTTAACCCACTCCCACTCCTCGTCGCCGTGGGCTCCACCGAGGCGGCGGCGGTTGCTG TGTTGCGCCGGCGAGCGGGCGGTCGACTTGGAGGTGCTGAGCCTCTGGGTACCAAGGATG AAATTTGTGCTTGTATTTGGATGACATAAGCGCGCCACGCACTTGCTAGGAAGGAATGAA AATCAGCGGACTTCTGACCTCTGCTGGCATCAATATCGCTCTTTCTGTGCTGTTTATATC GCTCTATTCTGTTCTGAGGAAGCAGCCAGCCAATGTCAGGGTCTACTTTGGGAGGAGGAT TGCCGAGGAGCATAATCGGCTCCGAGAAGCTTTTATCTTGGAGAGATTTGTACCATCTAC TGGCTGGATAGTAAAAGCCCTGCAGTGTACCGAGGAAGAGATCTTGGCTGCTGCTGGGCT AGATGCTGTTGTTTTCAATAGAATTCTAGTATTCAGCTTACGCATCTTCTCTCTAGCTGC CATTCTGTGTGTGTTTGGAATTCTACCACTGAACTACTTTGGGCAAGATATACATCATGT TCGGATTCCTTCAGAATCATTGGATATCTTTACAATTGGGAATGTGAAAGTGAGATCAAG ATGGCTTTGGGTCCATTGTGTAGCCTTGTACATAATATCAGGAGTAGCTTGCATTCTCCT ATATCTTGAGTACAAGCACATTGCTAGGCTGAGGCTCCGTCATCTTACTTGTGCAATGCC CAATCCAAGCCATTTTACTGTCCTTGTTCGTGGAATACCAAAGGAAACCAAAGAATCATG CAGTAATGCTATTGATGATTTCTTCACCAAGTACCATGGATCAAGCTACCTGTTCCATCA AGTTGTTTACAAAGTTGGAAAAGTTCAGAAGATAATGACTGGTGCTAAGAAGGCATACAG GAAATTCAAACATTTTACAGACAGCACTATTGATCAGAGGTGTCGAGCAATTTCATACCG GTGCTGTCTGTGCGGAGCCTCATCTAATTCTTTCCAGCTGTTGGCAACTGGGCTTGAGCA GAATCAGGGGAAATCTGACCTTCAAGATTCCAGCTTGAAACTAGATGATCAGGAATGTGC AGCTGCTTTTGTATATTTCAGAACTCGGTATGCTGCTCTTGTTGCCTCAGAAATACTCCA AACATCTAACCCTATGAAATGGGTTACTGATCTAGCTCCAGAACCAGATGATGTGTATTG GTCAAATCTTTGGCTACCTTATAAGCAGCTTTGGATTCGCCGAATAGCTACGCTCCTTGG TTCAATTGTTTTTATGTTATTCTTTCTGATACCAGTGACATTTATACAAGGACTATCTCA GCTAGAGCAGTTGCAGCAGAGGCTTCCTTTCCTGAAGGGGATACTGGAGAAGAAATACAT GAGCCAGCTTGTAACTGGGTACCTTCCCAGTGTCATACTGCAAATATTTTTATATGCCGT TGCACCGATAATGATATTATTTTCTACATTAGAGGGGCCTATATCTCACAGTGAAAGGAA GAGGAGTGCTTGCTGTAAAGTGCTGTACTTCACTGTTTGGAACATATTCTTTGGAAATGT ACTATCTGGTACTGTCATAAGCCAATTGAATGTGTTATCAAGCCCAAAGGACATCCCTGT CCAGCTTGCTAGAGCTATACCTGTCCAGGCTACCTTCTTTATCACCTATGTTCTGACATC AGGATGGGCCAGTTTATCATCTGAACTTATGCAATTATTTGGTTTAATATGGAACTTTGT GAGGAAATATATTCTACGTATGCCAGAAGACACAGAGTTTGTTCCCTCATTCCCATATCA CACAGAAGTGCCAAAAGTTTTGCTGTTCGGACTACTGGGCTTCACATGCTCTGTACTGGC ACCTTTGATCTTACCTTTTCTGTTAGTGTACTTCTTCCTTGGTTACATCGTGTACCGCAA TCAGTTGCTCAATGTTTACCGCACAAGATATGACACAGGGGGTTTGTACTGGCCAATCGC ACACAACGCAGTGATATTCTCTCTCGTGCTCACACAGATTATCTGCCTTGGTGTATTTGG CCTGAAAGAATCACCAGTAGCTGCAGGCTTCACCATACCTCTTATCATCCTCACTCTGTT ATTCAATCAGTATTGCAGAAATCGACTTCTCCCATTATTCAGAACTACCCCAGCACAGGA TTTAATTGACATGGACAGGGAAGACGAACGGTCAGGAAGAATGGATGAAATTCACCACCG GCTTCATTCTGCCTATTGTCAGTTCCACGACACTGAAGATATACCCTTGGAGAAAATTCA GACTGTCGGGAGCGATGAGGAACAAGGGTGTAGCTCTGATAAGTCGAATGGAAAAGAAAG CTTCGAGGAACCCAGAGCGGAGTTGTCTCACCCAACACTGAATGGACTCCCAGTTAGCCG TCTTCGGCATGCTGTGAAGTCGATTACTTTCCTTGTCAGATTGCAGAAAAGAGGTTTGTC AGAATAGAATAGGATATCTAACTACTAACCCCTTCATCAGCCTGTTCAGCGATGAAAATG TACAGCCACATACATCATACAACATACATTGAGAGAGCATCAGGATACCTGAAAAGCAAT TTTGTTGTTTTGATCCGTTTGATTTCCAAGCTAGTGACTCTAGGACATGCTAGTTAATCA GTATATTCAAGCCTTTGCCATGCAGATATTGTTGTAGTGCTAGGTCATTCTGTTACATGA AATTTAAACTTGTTTCTTTGGTAACCTCAGCTACTCTGCAACTCAATTACCCTCCTCTTC TAACTTCAACTCATCTGAGAATGTAAAACTGAAATTTCCATGCCTGTTAGCTT