Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0633400-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:27145970:27147649:-1 gene:Os12g0633400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 1-121 description:Similar to Pathogenesis-related protein PR-1 precursor. (Os12t0633400-01)
Sequence

ATGGACAAGATGATGCGCACGGTGATCGCCGCCGTCGTGGTCGGCCTCCTCGCCGCGGCC
CACACGGCCACCACCGCACCGGAACAATCCTACGGCGGCGCAACGGCGACCGTGGCGCCG
AAGCAGCCGGCGGCGGGGGAAGACGTCAACAAGGCCTTGGCGGCGGAGACGGCGGCTGCC
GAGGCGGAGGACGCCGCCGAGGAGGAGGACGCCGCGGCCGCTCTGGTCACCGGCTTCACC
GCCGGCGCGGCGAACTCCGCGCCGGGGGTGACTGCCGTCATGAAGCCGGTGCTGGAGAAG
GCGGACGCCGGGCAATTCTACCAGGACGTGCCATGGATTCCGGATCCCAACGACGAGGGG
AATCCTCCCAAGTCTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGCTGGCGCG
GCAGGATCATCGCCGCCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCG
AAGAAGCCGGAGGAGCCGCCGACGGTCGCGGCGGTCCAAAAGGACAATTGCGTCCCGCCG
GCGGCGCCCAAGCCAGCTGTTCCGGCGACGCCGTCGACGTCTCCTCCTTCGAATAAGGAG
TATGCTCCGGCGGCGCCAGGCGTGGTGCCGGTGAACCAGCCTTCTTCCCCGGCGGCGCCA
GCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGGCGCCAGCAGGCGTGGTG
CCGGCGCCGGTGCAGCCTTCTTCCCCGGCGACGGCGGTGCCAAAGCCTCCTTCCAATGAC
CCGTACGCCCCGGCGACCAGCAACACTCCGGCGGCGGAGGAGCAGAAGGACGGGCTGAAC
GAGAAGGCGATCAGCGACATCGTGAGGGAGCACAACATGTTCCGCACGAGGGAGCACGTG
CCACCCATAGTGTGGAACGCGACGCTGGCGAAGTACGCGCAGGAGTACGCGGATTTGAGG
AGAGGGGATTGCCAGCTGGAGCACTCTCATGGCCCCTACGGGGAGAACATGATGTTCGGG
ACGGGGAAGCAGTGGACGTGGAAGAAGACGGTGGACGAGTGGAGCGACGAGAAGAAGAGC
TACGACTACAAATCCAACAGCTGCAAGGCCGGCGCCATGTGCACCCACTACACCGCCATC
GTCTGGAAGAACACCACCGCCGTCGGCTGCGGCCGCGTCGTCTGCACCTCCGGCGACACC
ATCATGGTCTGCAGCTACTGGCCGCCCGGCAACTACGTCGGCGTCAAGCCCTACTAA

Peptide Sequence

PEP ID

Os12t0633400-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:27145970:27147649:-1 gene:Os12g0633400 transcript:Os12t0633400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 1-121 description:Similar to Pathogenesis-related protein PR-1 precursor. (Os12t0633400-01)
Sequence

MDKMMRTVIAAVVVGLLAAAHTATTAPEQSYGGATATVAPKQPAAGEDVNKALAAETAAA
EAEDAAEEEDAAAALVTGFTAGAANSAPGVTAVMKPVLEKADAGQFYQDVPWIPDPNDEG
NPPKSLPAAQVLPAKGGAGAAGSSPPSKEVQVDYYATTQPKKPEEPPTVAAVQKDNCVPP
AAPKPAVPATPSTSPPSNKEYAPAAPGVVPVNQPSSPAAPAGVVPAPVQPSSPAAPAGVV
PAPVQPSSPATAVPKPPSNDPYAPATSNTPAAEEQKDGLNEKAISDIVREHNMFRTREHV
PPIVWNATLAKYAQEYADLRRGDCQLEHSHGPYGENMMFGTGKQWTWKKTVDEWSDEKKS
YDYKSNSCKAGAMCTHYTAIVWKNTTAVGCGRVVCTSGDTIMVCSYWPPGNYVGVKPY

Transcript Sequence

Transcript ID

Os12t0633400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:27145970:27147649:-1 gene:Os12g0633400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 1-121 description:Similar to Pathogenesis-related protein PR-1 precursor. (Os12t0633400-01)
Sequence

ACACACAAGGGAAAAAAAAAGATGGACAAGATGATGCGCACGGTGATCGCCGCCGTCGTG
GTCGGCCTCCTCGCCGCGGCCCACACGGCCACCACCGCACCGGAACAATCCTACGGCGGC
GCAACGGCGACCGTGGCGCCGAAGCAGCCGGCGGCGGGGGAAGACGTCAACAAGGCCTTG
GCGGCGGAGACGGCGGCTGCCGAGGCGGAGGACGCCGCCGAGGAGGAGGACGCCGCGGCC
GCTCTGGTCACCGGCTTCACCGCCGGCGCGGCGAACTCCGCGCCGGGGGTGACTGCCGTC
ATGAAGCCGGTGCTGGAGAAGGCGGACGCCGGGCAATTCTACCAGGACGTGCCATGGATT
CCGGATCCCAACGACGAGGGGAATCCTCCCAAGTCTCTGCCGGCGGCGCAGGTCCTGCCG
GCCAAGGGCGGCGCTGGCGCGGCAGGATCATCGCCGCCGTCGAAGGAGGTGCAGGTGGAT
TACTACGCGACGACCCAGCCGAAGAAGCCGGAGGAGCCGCCGACGGTCGCGGCGGTCCAA
AAGGACAATTGCGTCCCGCCGGCGGCGCCCAAGCCAGCTGTTCCGGCGACGCCGTCGACG
TCTCCTCCTTCGAATAAGGAGTATGCTCCGGCGGCGCCAGGCGTGGTGCCGGTGAACCAG
CCTTCTTCCCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCG
GCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGACGGCGGTG
CCAAAGCCTCCTTCCAATGACCCGTACGCCCCGGCGACCAGCAACACTCCGGCGGCGGAG
GAGCAGAAGGACGGGCTGAACGAGAAGGCGATCAGCGACATCGTGAGGGAGCACAACATG
TTCCGCACGAGGGAGCACGTGCCACCCATAGTGTGGAACGCGACGCTGGCGAAGTACGCG
CAGGAGTACGCGGATTTGAGGAGAGGGGATTGCCAGCTGGAGCACTCTCATGGCCCCTAC
GGGGAGAACATGATGTTCGGGACGGGGAAGCAGTGGACGTGGAAGAAGACGGTGGACGAG
TGGAGCGACGAGAAGAAGAGCTACGACTACAAATCCAACAGCTGCAAGGCCGGCGCCATG
TGCACCCACTACACCGCCATCGTCTGGAAGAACACCACCGCCGTCGGCTGCGGCCGCGTC
GTCTGCACCTCCGGCGACACCATCATGGTCTGCAGCTACTGGCCGCCCGGCAACTACGTC
GGCGTCAAGCCCTACTAATTCATTCTTCATCATATCGATCGATCCACCACCCCTGCTGCT
GCCCTCCATCTCTCACCCATCATCGATCGATCGTCATCCATGCATCCACCATCGTCGTCG
TCTCATCTTATTAATAATATATATATGCATCAGATTCTTAATTATTATAACTAATTAATT
AATGTTATCTTAACTTGTTAGTGATATGCCCTAGAGGCTATCATAGAGATGATTATATCA
CACACTATGTTTACATATTTATCCGACTTTGTTCCTTGAAATAGATAAACTTATTATTGG
TTAATGAATGTGTGATTCTTTCATAAGACTCTTT