Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0631800-03
CDS Infomation	cds chromosome:IRGSP-1.0:12:27051976:27056936:-1 gene:Os12g0631800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Phytoene dehydrogenase description:Similar to predicted protein. (Os12t0631800-01);Phytoene dehydrogenase-like. (Os12t0631800-02);Phytoene dehydrogenase-like. (Os12t0631800-03)
Sequence	ATGTCGCCGGCGGCGAGGAGCCTCCTGCTATCGGCCGCCCGCCGTCAACGCCGCCGCTTC TCGACGGAGGCCCCGTCGTCGACTCCGCAGCAGCAGCTCCTCCCCAAGGGGAAGCGGTGG GACGCGGTGGTGATCGGCGGCGGCCACAACGGGCTCGCCGCCGCCGCCTACCTCGCCCGC GCCGGCCGCTCCGTCGCCGTGCTCGAGCGCCGTGGCGTCATCGGCGGCGCCGCCGTCTCC GAGTCCGACCTCGTCCCGGGCTTCCGCTTCTCCCGCTGCAGCTACCTCCTCAGCCTCCTC CGCCCCGCCCTGATCCAGGAGCTGGAGCTGGAGAGGCATGGGCTGAAGCTCTTGCCGCGG AGCCCGTCGTCATTCACGCCATGCCTAGACGGCAGGTATCTCCTTCTCGGCCCCGACGCT GAGCTGAACCACTCGGAGATCAGCAAGTTCTCCGAGAATGATGCCGGTGCATACCCGAGG TACGAGGAGAAGCTGGAGAAGTTCTGCAAACTCATGGACTTTGTCATAGACTCGCCTCCC CCTGAGATGAGGCATGAATACCACCTCTCCATGGTGGACAGGATGAAGGATAAGGTTGAC AAGTCTGTGTTCTGGAGCAAACTTCTTGGGATTGTGATGCAGCAGGGGCAGAAGGACATG GTGGATTTCTTTGACCTTCTCCTTTCACCAGCATCCAAGATCTTGAACAACTGGTTTGAG GGTGATGTGTTGAAGGCAACTCTTGCGACTGATGCTGTGATAGGTTCTATGGCTGGTGTC CACACTCCAGGATCTGGTTATGTTCTTCTGCATCATGTTATGGGGGAAACTGGTGGCCAA CGTGGAGTATGGGCGTATGTTGAAGGTGGTATGGGTTCAGTATCGTCAGCTATAAGCAAA GCAGCTCTTGAAGCAGGTGTGGAAATTTTAACAAATGCAGAGGTTTCCCAGATATCTGTT CATCACACTTCTGGGAAGGTACAGGGGGTAGTTTTGGCTGATGGAACAGAGGTGCTGACA TCAGTTGTTTTATCAAATGCAACTCCATATAGAACATTTGTGGACCTAGTGCCTGCCAAT GTTCTTCCAGACAACTTCCTCTCTGCTATCAAAACTGCAGATTATAGCTCTGCAACAACG AAAATTAATGTGGCTGTTGACAGGCTGCCACAGTTTTCCTGTTGCAAAGACTTTAATCCT GAAGGCGGTCCAGAACACATGGGCACCATACACATTGGATCTGAAAGCATGGAGGAAATC GATCTAGCGTACAGGGAAGCTGCAAATGGCGTCTCATCCACAAGACCTGTTATAGAAATG ACGATTCCTTCTGTGTTGGATAAGACCATCTCCCCACCAGGCCAGCATGTTATTAACCTT TTTGTTCAGTACACACCATACAAACTTTCAGAAGGCAGCTGGCAGGATTCTAATGTTAGA AAATCCTTTGCTGAAAGATGCTTTTCCTTGATTGATGAATATGCACCGGGTTTTAGCTCA TCAGTGGTAGGCTATGATATGCTGACTCCACCTGATCTTGAAAGGGAGTTTGGCCTAACA GGTGGTAACATCTTTCATGGCGCAATGGGCTTGGATTCACTTTTCCTCATGAGGCCTGCC AAGGGATGGTCAGATTACAGAACTCCAGTGAAGGGATTGTACCTCTGTGGCAGTGGTGCA CACCCAGGAGGTGGGGTAATGGGCGCTCCGGGCCGTAACGCTGCCTCCGTTGTTTTGGAA GATCTCAGGACAAAATAG

Peptide Sequence

PEP ID	Os12t0631800-03
PEP Infomation	pep chromosome:IRGSP-1.0:12:27051976:27056936:-1 gene:Os12g0631800 transcript:Os12t0631800-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Phytoene dehydrogenase description:Similar to predicted protein. (Os12t0631800-01);Phytoene dehydrogenase-like. (Os12t0631800-02);Phytoene dehydrogenase-like. (Os12t0631800-03)
Sequence	MSPAARSLLLSAARRQRRRFSTEAPSSTPQQQLLPKGKRWDAVVIGGGHNGLAAAAYLAR AGRSVAVLERRGVIGGAAVSESDLVPGFRFSRCSYLLSLLRPALIQELELERHGLKLLPR SPSSFTPCLDGRYLLLGPDAELNHSEISKFSENDAGAYPRYEEKLEKFCKLMDFVIDSPP PEMRHEYHLSMVDRMKDKVDKSVFWSKLLGIVMQQGQKDMVDFFDLLLSPASKILNNWFE GDVLKATLATDAVIGSMAGVHTPGSGYVLLHHVMGETGGQRGVWAYVEGGMGSVSSAISK AALEAGVEILTNAEVSQISVHHTSGKVQGVVLADGTEVLTSVVLSNATPYRTFVDLVPAN VLPDNFLSAIKTADYSSATTKINVAVDRLPQFSCCKDFNPEGGPEHMGTIHIGSESMEEI DLAYREAANGVSSTRPVIEMTIPSVLDKTISPPGQHVINLFVQYTPYKLSEGSWQDSNVR KSFAERCFSLIDEYAPGFSSSVVGYDMLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPA KGWSDYRTPVKGLYLCGSGAHPGGGVMGAPGRNAASVVLEDLRTK

Transcript Sequence

Transcript ID	Os12t0631800-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:27051976:27056936:-1 gene:Os12g0631800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Phytoene dehydrogenase description:Similar to predicted protein. (Os12t0631800-01);Phytoene dehydrogenase-like. (Os12t0631800-02);Phytoene dehydrogenase-like. (Os12t0631800-03)
Sequence	GCCACCGGCTGCAGGCGGCGGCGGCGGCTGAACCCCTAAACCCAATGTCGCCGGCGGCGA GGAGCCTCCTGCTATCGGCCGCCCGCCGTCAACGCCGCCGCTTCTCGACGGAGGCCCCGT CGTCGACTCCGCAGCAGCAGCTCCTCCCCAAGGGGAAGCGGTGGGACGCGGTGGTGATCG GCGGCGGCCACAACGGGCTCGCCGCCGCCGCCTACCTCGCCCGCGCCGGCCGCTCCGTCG CCGTGCTCGAGCGCCGTGGCGTCATCGGCGGCGCCGCCGTCTCCGAGTCCGACCTCGTCC CGGGCTTCCGCTTCTCCCGCTGCAGCTACCTCCTCAGCCTCCTCCGCCCCGCCCTGATCC AGGAGCTGGAGCTGGAGAGGCATGGGCTGAAGCTCTTGCCGCGGAGCCCGTCGTCATTCA CGCCATGCCTAGACGGCAGGTATCTCCTTCTCGGCCCCGACGCTGAGCTGAACCACTCGG AGATCAGCAAGTTCTCCGAGAATGATGCCGGTGCATACCCGAGGTACGAGGAGAAGCTGG AGAAGTTCTGCAAACTCATGGACTTTGTCATAGACTCGCCTCCCCCTGAGATGAGGCATG AATACCACCTCTCCATGGTGGACAGGATGAAGGATAAGGTTGACAAGTCTGTGTTCTGGA GCAAACTTCTTGGGATTGTGATGCAGCAGGGGCAGAAGGACATGGTGGATTTCTTTGACC TTCTCCTTTCACCAGCATCCAAGATCTTGAACAACTGGTTTGAGGGTGATGTGTTGAAGG CAACTCTTGCGACTGATGCTGTGATAGGTTCTATGGCTGGTGTCCACACTCCAGGATCTG GTTATGTTCTTCTGCATCATGTTATGGGGGAAACTGGTGGCCAACGTGGAGTATGGGCGT ATGTTGAAGGTGGTATGGGTTCAGTATCGTCAGCTATAAGCAAAGCAGCTCTTGAAGCAG GTGTGGAAATTTTAACAAATGCAGAGGTTTCCCAGATATCTGTTCATCACACTTCTGGGA AGGTACAGGGGGTAGTTTTGGCTGATGGAACAGAGGTGCTGACATCAGTTGTTTTATCAA ATGCAACTCCATATAGAACATTTGTGGACCTAGTGCCTGCCAATGTTCTTCCAGACAACT TCCTCTCTGCTATCAAAACTGCAGATTATAGCTCTGCAACAACGAAAATTAATGTGGCTG TTGACAGGCTGCCACAGTTTTCCTGTTGCAAAGACTTTAATCCTGAAGGCGGTCCAGAAC ACATGGGCACCATACACATTGGATCTGAAAGCATGGAGGAAATCGATCTAGCGTACAGGG AAGCTGCAAATGGCGTCTCATCCACAAGACCTGTTATAGAAATGACGATTCCTTCTGTGT TGGATAAGACCATCTCCCCACCAGGCCAGCATGTTATTAACCTTTTTGTTCAGTACACAC CATACAAACTTTCAGAAGGCAGCTGGCAGGATTCTAATGTTAGAAAATCCTTTGCTGAAA GATGCTTTTCCTTGATTGATGAATATGCACCGGGTTTTAGCTCATCAGTGGTAGGCTATG ATATGCTGACTCCACCTGATCTTGAAAGGGAGTTTGGCCTAACAGGTGGTAACATCTTTC ATGGCGCAATGGGCTTGGATTCACTTTTCCTCATGAGGCCTGCCAAGGGATGGTCAGATT ACAGAACTCCAGTGAAGGGATTGTACCTCTGTGGCAGTGGTGCACACCCAGGAGGTGGGG TAATGGGCGCTCCGGGCCGTAACGCTGCCTCCGTTGTTTTGGAAGATCTCAGGACAAAAT AGATGGTGACCCGAGGAAACATGGAAACGGTGATTGACACCAGGCTGGGTCTCGTTCAAG CACTGCACTGCAAAAGCAACCGAATTCCATCAGAATGAAAAGCACCTCATCAGACATCAG GTATAAACACCTGTGCCATGTGAGCTCACATATTAAGGAAATGGACAAACATTTCTTGAG GAGAGGCACATTTTCTGAATTAATTGGCCGACTTTCTAGTTTAGAGAGGGGAACATTCTT TGCCACCTGACCCTATTTCCCAGTATGAAGATATTTTGCATTTGTTCTCTTCTATTTGCA GCCTGTCTGAAATATATTATTCATCGGATTATCTACTTGATTGTAGGATAAATTAAATAT TTTTTTAACAATTATCAAATATCTTGGAACAAGTGGTCTATGC