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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0630100-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:26956203:26956894:-1 gene:Os12g0630100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Tolerance Of Nitrogen Deficiency 1, Thaumatin description:Thaumatin protein, Tolerance to nitrogen deficiency (Os12t0630100-01)
Sequence

ATGGCGTCAGCTCCGGCCGCCTCTTCCGCAGTGCTCCTCGTCGTGGTCCTGGTGGCGAGC
CTCGCCGCCGGCGGCGCCAACGCGGCGACCTTCACCATCACCAACCGTTGCTCGTTCACG
GTGTGGCCGGCGGCGACGCCGGTGGGCGGCGGCACGCAGCTGAACCCGGGGCAGACGTGG
ACCATCAACGTGCCCGCCGGGACCAGCTCCGGCAGGGTGTGGGGCCGGACCGGGTGCAGC
TTCGACGGCGCCGGCCGCGGCAGGTGCGCCACCGGCGACTGCGGCGGCGCGCTGTCGTGC
AGGCTGTCCGGGCAGCCGCCGCTGACGCTGGCGGAGTTCACGCTGGGGACGTCCGGCGGC
AACCGGGACTTCTACAACCTGTCGGTGATCGACGGGTACAACGTCGCCATGAGCTTCTCC
TGCAGCTCCGGCGTGACGCTGACGTGCAGGGAGAGGAGCTGCCCGGACGCGTACCAGTAC
CCCTCCGACGATTCCAAGCTGCGCTCCTGCAACGGCAACAGCAACTACCGAGTCGTCTTC
TGCCCATGA

Peptide Sequence

PEP ID

Os12t0630100-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:26956203:26956894:-1 gene:Os12g0630100 transcript:Os12t0630100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Tolerance Of Nitrogen Deficiency 1, Thaumatin description:Thaumatin protein, Tolerance to nitrogen deficiency (Os12t0630100-01)
Sequence

MASAPAASSAVLLVVVLVASLAAGGANAATFTITNRCSFTVWPAATPVGGGTQLNPGQTW
TINVPAGTSSGRVWGRTGCSFDGAGRGRCATGDCGGALSCRLSGQPPLTLAEFTLGTSGG
NRDFYNLSVIDGYNVAMSFSCSSGVTLTCRERSCPDAYQYPSDDSKLRSCNGNSNYRVVF
CP

Transcript Sequence

Transcript ID

Os12t0630100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:26956203:26956894:-1 gene:Os12g0630100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Tolerance Of Nitrogen Deficiency 1, Thaumatin description:Thaumatin protein, Tolerance to nitrogen deficiency (Os12t0630100-01)
Sequence

AATTAACAAGCTATACAAATTAACACAAAGATTAGAAGAAAGCAAGCAACAATGGCGTCA
GCTCCGGCCGCCTCTTCCGCAGTGCTCCTCGTCGTGGTCCTGGTGGCGAGCCTCGCCGCC
GGCGGCGCCAACGCGGCGACCTTCACCATCACCAACCGTTGCTCGTTCACGGTGTGGCCG
GCGGCGACGCCGGTGGGCGGCGGCACGCAGCTGAACCCGGGGCAGACGTGGACCATCAAC
GTGCCCGCCGGGACCAGCTCCGGCAGGGTGTGGGGCCGGACCGGGTGCAGCTTCGACGGC
GCCGGCCGCGGCAGGTGCGCCACCGGCGACTGCGGCGGCGCGCTGTCGTGCAGGCTGTCC
GGGCAGCCGCCGCTGACGCTGGCGGAGTTCACGCTGGGGACGTCCGGCGGCAACCGGGAC
TTCTACAACCTGTCGGTGATCGACGGGTACAACGTCGCCATGAGCTTCTCCTGCAGCTCC
GGCGTGACGCTGACGTGCAGGGAGAGGAGCTGCCCGGACGCGTACCAGTACCCCTCCGAC
GATTCCAAGCTGCGCTCCTGCAACGGCAACAGCAACTACCGAGTCGTCTTCTGCCCATGA
TTTCATGCATATGAACCTACTACTATATATATACTTCTACTAAACTGTATCAGGGAAAAT
AATAAGAACATACAATAAAACGAACGTGATCC