Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0628500-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:26906313:26910025:1 gene:Os12g0628500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Methionine aminopeptidase. (Os12t0628500-01)
Sequence

AAATATTTACACAATATGGCTGGCGGCTCTGCTGATGCAGTGACCAAGGAGATGGAGGCG
CTACTCGTTGGACAAAATCCAAATGCGGTTAGTGGAGAAACATGCGAGACCTCATCAAAA
GAAGGCAAAGTTGCAGATAGCAATGGATCTCATTCTTCACCACCAGAAGATGATGATGAT
GAAGCGCAAGGGGATGGTCCATCTCAAGATGGAGGATCAGAAGCTGCAAAGAAGAAAAAG
AAGAAAAGCAAATCCAAAAAGAAGAAAGGCCCTCTTCAGCAGACTGATCCTCCATCAATT
CCCATAGACGAACTTTTCCCATCAGGAGATTTCCCCGAGGGTGAAATTCAGCAATATAAG
GATGATAACTTATGGAGAACAACTAGTGAGGAAAAGAGGGAACTGGAGCGGCTACAAAAG
CCGATGTACAATGCTGTTCGCCGAGCAGCAGAAGTTCATAGACAGGTCCGGAAGCATATG
AGGAGCATTTTGAAGCCTGGAATGCTAATGATTGATCTATGTGAAACTTTGGAAAATATG
GTTAGGAAACTTATCAAGGAGAATGGTCTGCAAGCTGGTATTGCCTTTCCAACAGGGTGT
TCCTTGAATTGGGTTGCAGCTCACTGGACTCCAAATTCTGGTGATAAAACTGTACTACAA
TATGATGATGTAATGAAGTTGGATTTTGGGACACACATAGATGGGTACATAGTCGATTGT
GCATTCACTGTTGCATTCAATCCCATGTTTGATTCATTGCTTCAAGCCTCAAAAGATGCC
ACTAATACTGGAGTCAAGGAAGCTGGAATAGATGCACGGCTATGTGATGTTGGTGCAGCA
ATCCAAGAAGTCATGGAGTCGTACGAGGTTGAGATTAATGGAAAAGTTTTCCAAATCAAA
AGTGTGCGGAACCTCAATGGACACAGCATTGGACCATACCAAATCCACGCTGGAAAATCA
GTTCCAATTGTGAAAGGTGGAGAGCAAACAAAAATGGAAGAGGGGGAATTTTATGCCATT
GAAACTTTTGGATCTACAGGAAAGGGATTTGTAAGGGAGGATTTAGAATGCAGTCATTAC
ATGAAGAACTTTGATGTTGGACATGTACCTCTGAGGGTAGCAAAGGCTAAGCAACTACTT
GGAACGATTAACAACAATTTCGGAACGCTTGCTTTTTGTCGCCGGTACTTGGACCGCCTT
GGTGAGACCAAGTATCTCATGGCACTGAAAAATCTATGCGACGTTGGTATTGTTCAGCCG
TATCCTCCATTGTGCGACGTGAGGGGAAGCTATGTGTCACAATTTGAGCACACCATCTTA
CTCCGGCCAACCTGCAAGGAAGTCATATCCAGAGGCGACGACTACTGA

Peptide Sequence

PEP ID

Os12t0628500-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:26906313:26910025:1 gene:Os12g0628500 transcript:Os12t0628500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Methionine aminopeptidase. (Os12t0628500-01)
Sequence

KYLHNMAGGSADAVTKEMEALLVGQNPNAVSGETCETSSKEGKVADSNGSHSSPPEDDDD
EAQGDGPSQDGGSEAAKKKKKKSKSKKKKGPLQQTDPPSIPIDELFPSGDFPEGEIQQYK
DDNLWRTTSEEKRELERLQKPMYNAVRRAAEVHRQVRKHMRSILKPGMLMIDLCETLENM
VRKLIKENGLQAGIAFPTGCSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGYIVDC
AFTVAFNPMFDSLLQASKDATNTGVKEAGIDARLCDVGAAIQEVMESYEVEINGKVFQIK
SVRNLNGHSIGPYQIHAGKSVPIVKGGEQTKMEEGEFYAIETFGSTGKGFVREDLECSHY
MKNFDVGHVPLRVAKAKQLLGTINNNFGTLAFCRRYLDRLGETKYLMALKNLCDVGIVQP
YPPLCDVRGSYVSQFEHTILLRPTCKEVISRGDDY

Transcript Sequence

Transcript ID

Os12t0628500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:26906313:26910025:1 gene:Os12g0628500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Methionine aminopeptidase. (Os12t0628500-01)
Sequence

CTCACCGCTCGCCGAGGTTGCCGTCTCCTTGTCTCCTCCGCTCCTTGCGCCGCCGCCGCG
ACGAGTCGCGGGGAGGGGCGGCGATCTCCATCTCCATCTGAGGCGAGGAGAGCAGGGGAG
GTGAGGGGATCCTGGTGAGGTTTGTGATTACTGGACAATAGAAATATTTACACAATATGG
CTGGCGGCTCTGCTGATGCAGTGACCAAGGAGATGGAGGCGCTACTCGTTGGACAAAATC
CAAATGCGGTTAGTGGAGAAACATGCGAGACCTCATCAAAAGAAGGCAAAGTTGCAGATA
GCAATGGATCTCATTCTTCACCACCAGAAGATGATGATGATGAAGCGCAAGGGGATGGTC
CATCTCAAGATGGAGGATCAGAAGCTGCAAAGAAGAAAAAGAAGAAAAGCAAATCCAAAA
AGAAGAAAGGCCCTCTTCAGCAGACTGATCCTCCATCAATTCCCATAGACGAACTTTTCC
CATCAGGAGATTTCCCCGAGGGTGAAATTCAGCAATATAAGGATGATAACTTATGGAGAA
CAACTAGTGAGGAAAAGAGGGAACTGGAGCGGCTACAAAAGCCGATGTACAATGCTGTTC
GCCGAGCAGCAGAAGTTCATAGACAGGTCCGGAAGCATATGAGGAGCATTTTGAAGCCTG
GAATGCTAATGATTGATCTATGTGAAACTTTGGAAAATATGGTTAGGAAACTTATCAAGG
AGAATGGTCTGCAAGCTGGTATTGCCTTTCCAACAGGGTGTTCCTTGAATTGGGTTGCAG
CTCACTGGACTCCAAATTCTGGTGATAAAACTGTACTACAATATGATGATGTAATGAAGT
TGGATTTTGGGACACACATAGATGGGTACATAGTCGATTGTGCATTCACTGTTGCATTCA
ATCCCATGTTTGATTCATTGCTTCAAGCCTCAAAAGATGCCACTAATACTGGAGTCAAGG
AAGCTGGAATAGATGCACGGCTATGTGATGTTGGTGCAGCAATCCAAGAAGTCATGGAGT
CGTACGAGGTTGAGATTAATGGAAAAGTTTTCCAAATCAAAAGTGTGCGGAACCTCAATG
GACACAGCATTGGACCATACCAAATCCACGCTGGAAAATCAGTTCCAATTGTGAAAGGTG
GAGAGCAAACAAAAATGGAAGAGGGGGAATTTTATGCCATTGAAACTTTTGGATCTACAG
GAAAGGGATTTGTAAGGGAGGATTTAGAATGCAGTCATTACATGAAGAACTTTGATGTTG
GACATGTACCTCTGAGGGTAGCAAAGGCTAAGCAACTACTTGGAACGATTAACAACAATT
TCGGAACGCTTGCTTTTTGTCGCCGGTACTTGGACCGCCTTGGTGAGACCAAGTATCTCA
TGGCACTGAAAAATCTATGCGACGTTGGTATTGTTCAGCCGTATCCTCCATTGTGCGACG
TGAGGGGAAGCTATGTGTCACAATTTGAGCACACCATCTTACTCCGGCCAACCTGCAAGG
AAGTCATATCCAGAGGCGACGACTACTGATTGCGGCTGTAGCTTGTCATGTACCGGTTGT
TTGTGAGATCATTGTGCACCATTCTGGGCAACCTGTGTACTATCATGCTATGTATGGGAT
CATATGGCGGAATCATCAGATAAATAATCGAGAGACGTTTTCAGTTTTTTGTTTTGTTGT
TTACACGAGATACCAACTATCTGTTGTCTTTCTTGAAACTTTGAAATATGTAAAAAAAAA
AAAAGATGATCTTCATTGTGATGGATGATCACTAATGGTCGCTTGTC