Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0626400-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:26780492:26783584:-1 gene:Os12g0626400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOENE SYNTHASE 2 description:Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-) (Fruit ripening specific protein pTOM5). (Os12t0626400-01);Similar to Phytoene synthase 2 (Fragment). (Os12t0626400-02)
Sequence	AACCCCAACCATTCGACCCGCGCAGCGAGCCCCAACCCCACATCGCCGCGCGCCCCCGAT GGCGTCCTCCTCGTCGGCGGCGGCGCTCTGGACGGCGGCGCCCCACCCCCACGGCAGCTG CATCAGGATCCACGCCATCTTCCACCAGCGTCACCAGCGGAGGGGGAGGAGGCCGGTCGT CGTCGCCTCGTCGGTGAGGCCGCTGCAGGCCGCGAGCCTGGCGGTGGCCACGGCGCCGGT GGCCGTGGCGTCGAGGAGGACGGCGGCGGAGGAGGCCGTCTACGAGGTACTCAGCTTATG ACTCCTGAAAGGCGCAAAGCTGTCTGGGCAATCTATGTATGGTGCAGAAGAACTGATGAA CTGGTAGATGGCCCTAACTCGTCTTACATTACACCAAAGGCACTTGATCGATGGGAGAAG AGATTAGAAGATCTCTTCGAAGGCAGGCCATATGATATGTATGATGCAGCCCTCTCGGAC ACAGTGTCAAAGTTTCCAGTAGATATCCAGCCATTCAAAGACATGATTGAAGGAATGAGG CTTGACCTGTGGAAATCAAGGTATAGGAGCTTTGATGAGCTCTACCTCTACTGCTACTAC GTTGCTGGCACGGTTGGTCTCATGACAGTACCGGTGATGGGGATTGCCCCCGACTCGAAG GCCTCAACCGAGAGCGTGTACAACGCTGCGCTAGCTCTTGGGATCGCCAACCAGCTGACG AATATTCTCAGAGACGTAGGCGAAGACTCAAGGAGGGGAAGAATCTACCTTCCATTGGAT GAATTGGCAGAGGCAGGTCTGACAGAAGAAGACATATTCAGAGGGAAAGTGACTGATAAA TGGAGGAAGTTCATGAAGGGACAAATTCTGCGTGCCAGGTTATTCTTTGATGAGGCGGAG AAGGGCGTTGCGCATCTAGACTCTGCGAGTAGATGGCCGGTTCTGGCATCTTTGTGGTTA TACCGGCAGATCCTTGATGCTATCGAAGCAAACGACTACAACAACTTCACCAAGCGCGCG TATGTAAACAAGGCAAAGAAGCTGCTGTCTTTACCGGTCGCTTATGCAAGAGCGGCAGTT GCATCATGA

Peptide Sequence

PEP ID	Os12t0626400-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:26780492:26783584:-1 gene:Os12g0626400 transcript:Os12t0626400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOENE SYNTHASE 2 description:Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-) (Fruit ripening specific protein pTOM5). (Os12t0626400-01);Similar to Phytoene synthase 2 (Fragment). (Os12t0626400-02)
Sequence	NPNHSTRAASPNPTSPRAPDGVLLVGGGALDGGAPPPRQLHQDPRHLPPASPAEGEEAGR RRLVGEAAAGREPGGGHGAGGRGVEEDGGGGGRLRGTQLMTPERRKAVWAIYVWCRRTDE LVDGPNSSYITPKALDRWEKRLEDLFEGRPYDMYDAALSDTVSKFPVDIQPFKDMIEGMR LDLWKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIAPDSKASTESVYNAALALGIANQLT NILRDVGEDSRRGRIYLPLDELAEAGLTEEDIFRGKVTDKWRKFMKGQILRARLFFDEAE KGVAHLDSASRWPVLASLWLYRQILDAIEANDYNNFTKRAYVNKAKKLLSLPVAYARAAV AS

Transcript Sequence

Transcript ID	Os12t0626400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:26780492:26783584:-1 gene:Os12g0626400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOENE SYNTHASE 2 description:Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-) (Fruit ripening specific protein pTOM5). (Os12t0626400-01);Similar to Phytoene synthase 2 (Fragment). (Os12t0626400-02)
Sequence	ACAACCCCAACCATTCGACCCGCGCAGCGAGCCCCAACCCCACATCGCCGCGCGCCCCCG ATGGCGTCCTCCTCGTCGGCGGCGGCGCTCTGGACGGCGGCGCCCCACCCCCACGGCAGC TGCATCAGGATCCACGCCATCTTCCACCAGCGTCACCAGCGGAGGGGGAGGAGGCCGGTC GTCGTCGCCTCGTCGGTGAGGCCGCTGCAGGCCGCGAGCCTGGCGGTGGCCACGGCGCCG GTGGCCGTGGCGTCGAGGAGGACGGCGGCGGAGGAGGCCGTCTACGAGGTACTCAGCTTA TGACTCCTGAAAGGCGCAAAGCTGTCTGGGCAATCTATGTATGGTGCAGAAGAACTGATG AACTGGTAGATGGCCCTAACTCGTCTTACATTACACCAAAGGCACTTGATCGATGGGAGA AGAGATTAGAAGATCTCTTCGAAGGCAGGCCATATGATATGTATGATGCAGCCCTCTCGG ACACAGTGTCAAAGTTTCCAGTAGATATCCAGCCATTCAAAGACATGATTGAAGGAATGA GGCTTGACCTGTGGAAATCAAGGTATAGGAGCTTTGATGAGCTCTACCTCTACTGCTACT ACGTTGCTGGCACGGTTGGTCTCATGACAGTACCGGTGATGGGGATTGCCCCCGACTCGA AGGCCTCAACCGAGAGCGTGTACAACGCTGCGCTAGCTCTTGGGATCGCCAACCAGCTGA CGAATATTCTCAGAGACGTAGGCGAAGACTCAAGGAGGGGAAGAATCTACCTTCCATTGG ATGAATTGGCAGAGGCAGGTCTGACAGAAGAAGACATATTCAGAGGGAAAGTGACTGATA AATGGAGGAAGTTCATGAAGGGACAAATTCTGCGTGCCAGGTTATTCTTTGATGAGGCGG AGAAGGGCGTTGCGCATCTAGACTCTGCGAGTAGATGGCCGGTTCTGGCATCTTTGTGGT TATACCGGCAGATCCTTGATGCTATCGAAGCAAACGACTACAACAACTTCACCAAGCGCG CGTATGTAAACAAGGCAAAGAAGCTGCTGTCTTTACCGGTCGCTTATGCAAGAGCGGCAG TTGCATCATGAACAATCACTAGATCAGATGCCTTATTATTTTTTTTCTTTCATTTTCTTT TCTTTTGATTTCGCACGATTTCTTGGCTGTTGTATATATTCAAGCAGCTACCTGTATGCC ATAAGCCTGCCACAGTTTTTCTTTAGTTCAAGGGACTGATTTCAGGTCCCTCAATACTCA ACTCTTGTTAGAAACAAATACAGAGGGGGTAAGCCCCACAGTTCAAGAAGCATATTACTC TTCATTTGTCTTC