Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0624900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:26693520:26696511:1 gene:Os12g0624900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GATA TRANSCRIPTION FACTOR 25 description:Similar to GATA transcription factor 2 (AtGATA-2). (Os12t0624900-01)
Sequence

ATGGATGTGCACCCGCCGAATGCGGCCGCCTCCTCGCTGGAGGAGTTGTTCCCGCACCAG
CCCGCCACGGAAAGTGATAGAAGTGGCATAGAGTGGCTCTCTGTCTATGTAGAGGACTGC
TTGTCAACCTCTGCATCCTGCACAAACCCTGTCTCTGCAGAACTACCGCCTATTACAATG
GCAAGTCAAGGTGCTGCAAAACCAAAGTTACCACCACGCTCATCTACCAATGCAAGAAAA
AAGAAAAGGAGCCTGGCATCTGTCATAAGCGACACTGATGACCAACATTGTATCACGCTG
TTTGTCGAGCCACCGCTACTCCTGCTCGATCATAAGGACTGGCTAGCAGAGAGTGAGCTT
ATCCTCCCCAAGAAGGACAAAGATGAAGAACTTGTCCAAGAGCAAGAACAAGAGGAGGAA
GAGAATTACAAAATGAGTGCAGGAATGCAATTCCAGCAGGAGCAACTGGTGATCACTTGT
AGCTATTGTTTGTCCAGCCAATCACCACAGTGGTGGGATGGTCCATCAGGGCCTACCTGC
GATGCTTGTCGTCTGAGGATTGAGGCGAGGAATGGGCACACCACCAGTTCCAAGAAGCGC
TATGGCCAAGAGATTGACAAAGAACAGGACATAGGAAAGCGGCGAGATAAGAAGAAGATC
AAGAAGGCTGTTTATGTGAATGATGAGCTGCTATCGGAGGAGCCAATGAAGAGGTGCACC
CATTGCTTGTCCTACAAGACGCCACAGTGGAGGACCGGTCCCTTGGGGCCTAAGACGCTA
TGCAATGCTTGCGGTGTGAGGTTCAAGTCTGGCAGGCTGCTGCCGGAATACAGGCCTGCT
AATAGTCCAACTTTTGTGAGTGACATACACTCCAATTCTCATAAGAAGGTCATGCAGCTG
AGGAATTCTGTTCCACACCCAAGGAAGTGA

Peptide Sequence

PEP ID

Os12t0624900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:26693520:26696511:1 gene:Os12g0624900 transcript:Os12t0624900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GATA TRANSCRIPTION FACTOR 25 description:Similar to GATA transcription factor 2 (AtGATA-2). (Os12t0624900-01)
Sequence

MDVHPPNAAASSLEELFPHQPATESDRSGIEWLSVYVEDCLSTSASCTNPVSAELPPITM
ASQGAAKPKLPPRSSTNARKKKRSLASVISDTDDQHCITLFVEPPLLLLDHKDWLAESEL
ILPKKDKDEELVQEQEQEEEENYKMSAGMQFQQEQLVITCSYCLSSQSPQWWDGPSGPTC
DACRLRIEARNGHTTSSKKRYGQEIDKEQDIGKRRDKKKIKKAVYVNDELLSEEPMKRCT
HCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKKVMQL
RNSVPHPRK

Transcript Sequence

Transcript ID

Os12t0624900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:26693520:26696511:1 gene:Os12g0624900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GATA TRANSCRIPTION FACTOR 25 description:Similar to GATA transcription factor 2 (AtGATA-2). (Os12t0624900-01)
Sequence

CGGAAACCTACCCCCTCTTCTTCCTCCGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC
TCTCTCCTCAACCGTGCGGCTGCCTCCTCCTCGTCGCTGGGCATGGATGTGCACCCGCCG
AATGCGGCCGCCTCCTCGCTGGAGGAGTTGTTCCCGCACCAGCCCGCCACGGAAAGTGAT
AGAAGTGGCATAGAGTGGCTCTCTGTCTATGTAGAGGACTGCTTGTCAACCTCTGCATCC
TGCACAAACCCTGTCTCTGCAGAACTACCGCCTATTACAATGGCAAGTCAAGGTGCTGCA
AAACCAAAGTTACCACCACGCTCATCTACCAATGCAAGAAAAAAGAAAAGGAGCCTGGCA
TCTGTCATAAGCGACACTGATGACCAACATTGTATCACGCTGTTTGTCGAGCCACCGCTA
CTCCTGCTCGATCATAAGGACTGGCTAGCAGAGAGTGAGCTTATCCTCCCCAAGAAGGAC
AAAGATGAAGAACTTGTCCAAGAGCAAGAACAAGAGGAGGAAGAGAATTACAAAATGAGT
GCAGGAATGCAATTCCAGCAGGAGCAACTGGTGATCACTTGTAGCTATTGTTTGTCCAGC
CAATCACCACAGTGGTGGGATGGTCCATCAGGGCCTACCTGCGATGCTTGTCGTCTGAGG
ATTGAGGCGAGGAATGGGCACACCACCAGTTCCAAGAAGCGCTATGGCCAAGAGATTGAC
AAAGAACAGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAAGGCTGTTTATGTG
AATGATGAGCTGCTATCGGAGGAGCCAATGAAGAGGTGCACCCATTGCTTGTCCTACAAG
ACGCCACAGTGGAGGACCGGTCCCTTGGGGCCTAAGACGCTATGCAATGCTTGCGGTGTG
AGGTTCAAGTCTGGCAGGCTGCTGCCGGAATACAGGCCTGCTAATAGTCCAACTTTTGTG
AGTGACATACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACAC
CCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACT
CTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTA
GGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGC
TTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCA
TGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGTTGG
AGATCATCAGTTTAATACCAATGGGTGGTTGCTACCTTTGTTATCCCACCATTGTCTTGC
AGCATGCTTGTTCTGTGATACTCGCTGAATATGTTTGCAAGATGGAAATCAGAATTCAGA
GCAGCCTCTT