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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0624200-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:26669155:26670534:1 gene:Os12g0624200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CATION/CA2+ EXCHANGER 4 description:Similar to K-exchanger-like protein. (Os12t0624200-00)
Sequence

ATGGCGGCCTTCTTGCGAACGCTGCACCGGCGAAGAACGCGCAATGCCGCCGCCGCCGCG
TTCTTGGCTCTCGCCGTCGTCGTCGTCGTCTTCTTCTTGTCCGTGTTCGTCGCCACGCGG
AATGAGGCTGACATCTTCTTCAGTGGCGTCGCGGCGGCGAGCTCGTCGTCGCCGGATTCC
TCGTCCGGTGGGTGCAGGGAGCTGCAGGCGCTCGACGGCGATGGCGCGAGGTGCCGGTAT
CTGCGGGCGCACGCGCCGTGCGCGCCGGTGGGGTACGTGGACTACCTCCGGCTGCTGTAC
TGCGGGTTCGGGCGGGCGCCATGGCTGGGCTACGCGGCGCTCGCGCTGTGGCTGCTCGTG
CTCTTCTACCTCCTCGGCGACACGGCGTCGGCCTACTTCTGCGCCTCGCTGGAGGGGCTC
TCCGCCGTGCTCCGCCTGCCGCCGGCGATCGCCGGCGTCACGCTGCTGTCGCTCGGGAAC
GGCGCGCCCGACGTGCTCTCTAGCGTCGTGGCGTTCGCCGCGGGGGCACGCGGCGGCGAC
GGCGGCGGCGGCGGAGGGGAGGATGCCGGGGATGTTGGCCTCAGCGGCGTGCTCGGTGGC
GCGCTGTTCGTGTCCACCGTCGTCGCCGGCGTGGTCGCTATCGTCGCCGGGCGTCGCGGT
GGTGGCGAGCCGGTGATCATCGAGCGGCGCGGGTTCGTGCGCGACGTGTGCTTCCTCCTC
GTGGCGCTCTGCTACCTCCTCGCCGTGCTGCTCACCGGCGCCGTCACCGTCTGGTCCGCC
GCGTCGTTCCTCTCCCTCTACGCCGGCTACGTCCTCCTCGTCTGGACCTCGCACTGCTGC
GCCAACGCCTCCGACGAACTCGAAGTGGACGACACCAAGCAGCCCACCTCCGACCTCGCC
GCGCCGCTCCTCGTCGTCGACGACGACGACGCGTCACCGCCTCCACTCCCCGTCTCCTCC
TCCTCCAAGCCCACCTCCGCGCCGAGAACGTTCGCGCGCCGCCTCGTCGACCTCCTCCAC
TCGCCGCTCTACCTCCCGCGACGCCTCACCATCCCGGACATCGCGGCGCACCGGTGGTCG
AAGCCCACCGCGGTGGCCACCGCGCTCCTCTCCCCGCTCCTCCTCGCCGCCACCACCGCG
CCCACCACCACAGCGACCACCCTCCTCGCCGCCACGCTCGCGGGCGCCCTCCTCGCCGCC
GCCGCGGCGGCCACCACGGACGCCGCGTCCCCGCCCAAGAGCCGCTCGGCCCGCCTCCCG
TGGCTCGCCGGCGGGTTCCTGATGTCGGTGCTCTGGTCGTACGTGCTCGCGCGGGAGCTC
GTCGCGCTGCTGGTCTCCATCG

Peptide Sequence

PEP ID

Os12t0624200-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:26669155:26670534:1 gene:Os12g0624200 transcript:Os12t0624200-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CATION/CA2+ EXCHANGER 4 description:Similar to K-exchanger-like protein. (Os12t0624200-00)
Sequence

MAAFLRTLHRRRTRNAAAAAFLALAVVVVVFFLSVFVATRNEADIFFSGVAAASSSSPDS
SSGGCRELQALDGDGARCRYLRAHAPCAPVGYVDYLRLLYCGFGRAPWLGYAALALWLLV
LFYLLGDTASAYFCASLEGLSAVLRLPPAIAGVTLLSLGNGAPDVLSSVVAFAAGARGGD
GGGGGGEDAGDVGLSGVLGGALFVSTVVAGVVAIVAGRRGGGEPVIIERRGFVRDVCFLL
VALCYLLAVLLTGAVTVWSAASFLSLYAGYVLLVWTSHCCANASDELEVDDTKQPTSDLA
APLLVVDDDDASPPPLPVSSSSKPTSAPRTFARRLVDLLHSPLYLPRRLTIPDIAAHRWS
KPTAVATALLSPLLLAATTAPTTTATTLLAATLAGALLAAAAAATTDAASPPKSRSARLP
WLAGGFLMSVLWSYVLARELVALLVSI

Transcript Sequence

Transcript ID

Os12t0624200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:26669155:26670534:1 gene:Os12g0624200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CATION/CA2+ EXCHANGER 4 description:Similar to K-exchanger-like protein. (Os12t0624200-00)
Sequence

ATCATCACTAAGCTCCAACCTCCTCTCTGTCATCTCCCATGGCGGCCTTCTTGCGAACGC
TGCACCGGCGAAGAACGCGCAATGCCGCCGCCGCCGCGTTCTTGGCTCTCGCCGTCGTCG
TCGTCGTCTTCTTCTTGTCCGTGTTCGTCGCCACGCGGAATGAGGCTGACATCTTCTTCA
GTGGCGTCGCGGCGGCGAGCTCGTCGTCGCCGGATTCCTCGTCCGGTGGGTGCAGGGAGC
TGCAGGCGCTCGACGGCGATGGCGCGAGGTGCCGGTATCTGCGGGCGCACGCGCCGTGCG
CGCCGGTGGGGTACGTGGACTACCTCCGGCTGCTGTACTGCGGGTTCGGGCGGGCGCCAT
GGCTGGGCTACGCGGCGCTCGCGCTGTGGCTGCTCGTGCTCTTCTACCTCCTCGGCGACA
CGGCGTCGGCCTACTTCTGCGCCTCGCTGGAGGGGCTCTCCGCCGTGCTCCGCCTGCCGC
CGGCGATCGCCGGCGTCACGCTGCTGTCGCTCGGGAACGGCGCGCCCGACGTGCTCTCTA
GCGTCGTGGCGTTCGCCGCGGGGGCACGCGGCGGCGACGGCGGCGGCGGCGGAGGGGAGG
ATGCCGGGGATGTTGGCCTCAGCGGCGTGCTCGGTGGCGCGCTGTTCGTGTCCACCGTCG
TCGCCGGCGTGGTCGCTATCGTCGCCGGGCGTCGCGGTGGTGGCGAGCCGGTGATCATCG
AGCGGCGCGGGTTCGTGCGCGACGTGTGCTTCCTCCTCGTGGCGCTCTGCTACCTCCTCG
CCGTGCTGCTCACCGGCGCCGTCACCGTCTGGTCCGCCGCGTCGTTCCTCTCCCTCTACG
CCGGCTACGTCCTCCTCGTCTGGACCTCGCACTGCTGCGCCAACGCCTCCGACGAACTCG
AAGTGGACGACACCAAGCAGCCCACCTCCGACCTCGCCGCGCCGCTCCTCGTCGTCGACG
ACGACGACGCGTCACCGCCTCCACTCCCCGTCTCCTCCTCCTCCAAGCCCACCTCCGCGC
CGAGAACGTTCGCGCGCCGCCTCGTCGACCTCCTCCACTCGCCGCTCTACCTCCCGCGAC
GCCTCACCATCCCGGACATCGCGGCGCACCGGTGGTCGAAGCCCACCGCGGTGGCCACCG
CGCTCCTCTCCCCGCTCCTCCTCGCCGCCACCACCGCGCCCACCACCACAGCGACCACCC
TCCTCGCCGCCACGCTCGCGGGCGCCCTCCTCGCCGCCGCCGCGGCGGCCACCACGGACG
CCGCGTCCCCGCCCAAGAGCCGCTCGGCCCGCCTCCCGTGGCTCGCCGGCGGGTTCCTGA
TGTCGGTGCTCTGGTCGTACGTGCTCGCGCGGGAGCTCGTCGCGCTGCTGGTCTCCATCG