Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0624000-02
CDS Infomation	cds chromosome:IRGSP-1.0:12:26658185:26662924:1 gene:Os12g0624000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Methionine synthase protein. (Os12t0624000-01);Similar to Methionine synthase protein. (Os12t0624000-02)
Sequence	ATGGCGTCTCACATTGTTGGATACCCCCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCC CTGGAGTCTTTCTGGGATGGGAAGAGCAGCGCTGAGGATTTGGAGAAGGTTGCGACCGAC CTCAGGGCCAGCATCTGGAAGCAAATGGCTGACGCTGGGATCAAGTATATCCCCAGCAAC ACCTTCTCGTACTATGATCAGGTTCTTGACACGACCGCCATGCTTGGTGCTGTCCCAGAG CGCTACTCATGGACCGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGA AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTACCACTTTATC GTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCCCACAAGGCTGTGAATGAA TACAAGGAGGCCAAGGCGCTCGGCGTTGACACCGTGCCAGTACTTGTTGGACCAGTTTCA TACTTGTTGCTCTCCAAGCCTGCCAAGGGTGTAGAGAAGTCGTTCGCTCTTCTTTCCCTT CTCAGCAGCATCCTTCCTGTCTACAAGGAGGTTATTGCTGAGTTGAAGGCAGCTGGTGCT ACATGGATTCAGTTTGATGAGCCCACACTTGTTCTTGACCTTGACTCTCACCAATTGGCT GCATTCTCTGCAGCGTACACAGAACTCGAGTCGGCACTTTCTGGATTGAATGTGCTTATT GAGACATACTTCGCTGACATTCCTGCTGAATCATACAAGACCCTCACATCCCTGAACAGC GTGACTGCTTATGGTTTTGACCTTATCCGTGGTTCCAAGACTCTTGACCTTGTCAAGAGT GCTGGTTTCCCCTCTGGCAAGTACCTCTTTGCTGGTGTTGTGGATGGACGCAACATCTGG GCTGATGATCTCGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTGGAAAG GACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATCTTGTAAAT GAGACCAAGCTCGATAGCGAGATTAAGTCATGGCTTGCTTTTGCTGCCCAAAAAGTGGTT GAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGGCTTACTTTGCAGCA AACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAA AAGGCTGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTAGG TTGGACGCACAGCAGAAGAAGCTCAACCTTCCAGTCCTTCCTACAACCACAATTGGTTCA TTCCCACAGACTGTGGAGCTCAGGAGAGTCCGCCGTGAGTACAAGGCTAAAAAGATCTCT GAGGATGAGTACGTCAGTGCCATCAAGGAGGAAATCAGCAAGGTTGTTAAGATCCAGGAA GAGCTTGACATTGATGTGCTTGTTCACGGCGAGCCTGAGAGAAACGATATGGTTGAGTAC TTTGGTGAGCAGCTTTCTGGTTTTGCATTTACTGCCAATGGATGGGTGCAATCCTATGGA TCCCGGTGTGTCAAGCCACCAATTATCTATGGTGATGTGAGCCGCCCCAACGCCATGACT GTGTTCTGGTCCAAGATGGCGCAGAGCATGACCTCTCGCCCCATGAAGGGAATGTTGACT GGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGGTTTGAGACA TGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGACCTTGAGGCTGGTGGTATA CAGGTCATCCAAATCGATGAGGCTGCTTTGAGAGAAGGTCTGCCCCTCCGCAAGGCGGAG CATGCTTTCTACTTGGACTGGGCTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAG GACACCACCCAGATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCC ATCATAAACATGGACGCCGATGTGATCACCATCGAGAACTCCCGGTCCGACGAGAAGCTG CTCTCTGTCTTCCGCGAGGGTGTGAAGTATGGTGCTGGCATTGGTCCTGGTGTCTACGAC ATCCACTCCCCCAGGATCCCGTCCACGGAGGAGATTGCGGACCGCATCAACAAGATGCTT GCGGTGCTCGACACTAACATTCTCTGGGTGAACCCTGACTGCGGTCTCAAGACCCGCAAG TACACCGAGGTGAAGCCTGCCCTCACCAACATGGTTTTGGCCGCCAAGCTCATCCGCACC CAGCTCGCTAGCGCGAAGTGA

Peptide Sequence

PEP ID	Os12t0624000-02
PEP Infomation	pep chromosome:IRGSP-1.0:12:26658185:26662924:1 gene:Os12g0624000 transcript:Os12t0624000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Methionine synthase protein. (Os12t0624000-01);Similar to Methionine synthase protein. (Os12t0624000-02)
Sequence	MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLEKVATDLRASIWKQMADAGIKYIPSN TFSYYDQVLDTTAMLGAVPERYSWTGGEIGFSTYFSMARGNATVPAMEMTKWFDTNYHFI VPELGPNTKFSYSSHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVEKSFALLSL LSSILPVYKEVIAELKAAGATWIQFDEPTLVLDLDSHQLAAFSAAYTELESALSGLNVLI ETYFADIPAESYKTLTSLNSVTAYGFDLIRGSKTLDLVKSAGFPSGKYLFAGVVDGRNIW ADDLAASLTTLESLEAIVGKDKLVVSTSCSLMHTAVDLVNETKLDSEIKSWLAFAAQKVV EVNALAKALAGQKDEAYFAANTAAQASRRSSPRVTNEEVQKAAAALRGSDHRRATNVSAR LDAQQKKLNLPVLPTTTIGSFPQTVELRRVRREYKAKKISEDEYVSAIKEEISKVVKIQE ELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPNAMT VFWSKMAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKKEVEDLEAGGI QVIQIDEAALREGLPLRKAEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHS IINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKML AVLDTNILWVNPDCGLKTRKYTEVKPALTNMVLAAKLIRTQLASAK

Transcript Sequence

Transcript ID	Os12t0624000-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:26658185:26662924:1 gene:Os12g0624000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Methionine synthase protein. (Os12t0624000-01);Similar to Methionine synthase protein. (Os12t0624000-02)
Sequence	ACTGGATCTGGTGATATAGCCCCATGTATAGGAATCAGGAAGATTAGTAGAACAGAAAAC ACAAAAGTATGCTTTAATAGTTGGATGGCATATACCTTTATTCGGATCACCGTTCCAAAT GTGACGTTAGTATCCGTTAGTGGCATGCTTTTTAATCTAACAAGGCGTTCTTCATCGTGT GAAAGATGGCGTCTCACATTGTTGGATACCCCCGCATGGGCCCCAAGAGGGAGCTCAAGT TTGCCCTGGAGTCTTTCTGGGATGGGAAGAGCAGCGCTGAGGATTTGGAGAAGGTTGCGA CCGACCTCAGGGCCAGCATCTGGAAGCAAATGGCTGACGCTGGGATCAAGTATATCCCCA GCAACACCTTCTCGTACTATGATCAGGTTCTTGACACGACCGCCATGCTTGGTGCTGTCC CAGAGCGCTACTCATGGACCGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTA GGGGAAATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTACCACT TTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCCCACAAGGCTGTGA ATGAATACAAGGAGGCCAAGGCGCTCGGCGTTGACACCGTGCCAGTACTTGTTGGACCAG TTTCATACTTGTTGCTCTCCAAGCCTGCCAAGGGTGTAGAGAAGTCGTTCGCTCTTCTTT CCCTTCTCAGCAGCATCCTTCCTGTCTACAAGGAGGTTATTGCTGAGTTGAAGGCAGCTG GTGCTACATGGATTCAGTTTGATGAGCCCACACTTGTTCTTGACCTTGACTCTCACCAAT TGGCTGCATTCTCTGCAGCGTACACAGAACTCGAGTCGGCACTTTCTGGATTGAATGTGC TTATTGAGACATACTTCGCTGACATTCCTGCTGAATCATACAAGACCCTCACATCCCTGA ACAGCGTGACTGCTTATGGTTTTGACCTTATCCGTGGTTCCAAGACTCTTGACCTTGTCA AGAGTGCTGGTTTCCCCTCTGGCAAGTACCTCTTTGCTGGTGTTGTGGATGGACGCAACA TCTGGGCTGATGATCTCGCCGCATCTCTCACCACCCTCGAGTCTCTTGAGGCTATTGTTG GAAAGGACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATCTTG TAAATGAGACCAAGCTCGATAGCGAGATTAAGTCATGGCTTGCTTTTGCTGCCCAAAAAG TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGGCTTACTTTG CAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAG TCCAAAAGGCTGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCG CTAGGTTGGACGCACAGCAGAAGAAGCTCAACCTTCCAGTCCTTCCTACAACCACAATTG GTTCATTCCCACAGACTGTGGAGCTCAGGAGAGTCCGCCGTGAGTACAAGGCTAAAAAGA TCTCTGAGGATGAGTACGTCAGTGCCATCAAGGAGGAAATCAGCAAGGTTGTTAAGATCC AGGAAGAGCTTGACATTGATGTGCTTGTTCACGGCGAGCCTGAGAGAAACGATATGGTTG AGTACTTTGGTGAGCAGCTTTCTGGTTTTGCATTTACTGCCAATGGATGGGTGCAATCCT ATGGATCCCGGTGTGTCAAGCCACCAATTATCTATGGTGATGTGAGCCGCCCCAACGCCA TGACTGTGTTCTGGTCCAAGATGGCGCAGAGCATGACCTCTCGCCCCATGAAGGGAATGT TGACTGGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGGTTTG AGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGGTCGAGGACCTTGAGGCTGGTG GTATACAGGTCATCCAAATCGATGAGGCTGCTTTGAGAGAAGGTCTGCCCCTCCGCAAGG CGGAGCATGCTTTCTACTTGGACTGGGCTGTTCACTCCTTCAGAATCACAAACTGCGGTG TTCAGGACACCACCCAGATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCC ACTCCATCATAAACATGGACGCCGATGTGATCACCATCGAGAACTCCCGGTCCGACGAGA AGCTGCTCTCTGTCTTCCGCGAGGGTGTGAAGTATGGTGCTGGCATTGGTCCTGGTGTCT ACGACATCCACTCCCCCAGGATCCCGTCCACGGAGGAGATTGCGGACCGCATCAACAAGA TGCTTGCGGTGCTCGACACTAACATTCTCTGGGTGAACCCTGACTGCGGTCTCAAGACCC GCAAGTACACCGAGGTGAAGCCTGCCCTCACCAACATGGTTTTGGCCGCCAAGCTCATCC GCACCCAGCTCGCTAGCGCGAAGTGAGGATCGCCTTTGCAGCAAGTTCCCTTCGATTTTG AGGAGGAATGCCATCATAGCCATCTTGTTTTTGAATAATCTGGGTCCAGTGGATCCACTG TCTGTGGTTAGGTTTAGTCAGTCTCTTGGGGCCAAGATCACTCATACCCATTTTACTTTG AATGAATTTGGTGGTTTTTGAGGCAGTCTGTCGGTGTATTTGTATTGTAAACTGAGTGGA AATCAGCAGTGTTTCATCTACATCTGAGTTGTTGCGGATCAAATTACAAAATTTTCAAGG AGAGTTGATGTTATGTTCTGCC