Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0621900-03
CDS Infomation

cds chromosome:IRGSP-1.0:12:26551430:26555878:1 gene:Os12g0621900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-01);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-02);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-03);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-04)
Sequence

ATGCCGCTGCGCCCGCCGCCCCCGCCTCAGGGATTCCTCACCGCGTATCCATCCGCAGCT
TTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGTGCTGACCTTC
AGGTTCCACTCCCTCGCCGTCTTGAAATTATTCGACCGCATCCGCGAGTACCGTCTGCAC
GATTACCGGTACCAGGCAACGCGAGGCTGGTACAGCTCCGGGACGGCGCCGGAGGATGCT
CTTCTTCCCTGTGCGGTTGCTCGACCACCGAGGATGTATGGGTGCGTGATCGGGGTGCAG
CGCGGTCGGACGGTGGAGGTCGTCGACACCTCCGACATCTTGCTCGACACCGACCCCGGA
ACCCTCGACCGCGACTTGTTGAAGAAGAAGCTCGAGACCTACAAGAAGGCGTTCCCTGGC
TTGGCCATTCTTGGGTGGTACTCCATTGACACTCATGTGACGAACACCGATATGGAAACC
AACCAGGCTTTGATGGATGCTAGTGGAACAACCTTTTATCTTCTATTCAATCCTGCAATG
AACCTTTCCCTGAAGGATCTCCCAGTGACTATTTATGAAAAAGTGCACTCTACCAATAGG
AGTCCCACTCCGTTAATCTTTGTCCAAGGCAAATATAAAACTGAGACTGTAGAGGCAGAG
AGGATATCTTTAGACCATACGTGTCCTGTAGTTTCTGATGTTAGTGTGCCACCTCTTGTT
GGAAAAGGGCAACATGCAAATATTATGCAGACTTCTGGATTTAAGCTGATGCTGTTTGAA
ATTCCTTCTGGTTTCGCGATGTTTGAAGTTTCACAGGAACTGATTGCACGCCCTAAGGAC
ATATGGGCACGATTTGCTTATCAGGATGACATTACAAATGTTATTGTTACCCTGGGTTCT
ATTCAGATCCATAACAAATCTGTTGCTAGGGATATTATTGTTGGTCCTGGTGACGAACTG
AAAGAATTTATCCTAAGCTTTTGCACTCACAACTACTTAATTGTTCAAGATGTAGAGCTT
AAAGATGTTATCGAGAAGAAACTTAATATCTATTGTTACTGTAATCCAACTGTTGTCGGT
GAATTGACATGGGGACTGAACTATGTCCTACATAAGTTGTTACCTCAAGAGCAAAGTTTA
ACTCATGAGCCTTATCTTCCACTAAGCAAGGCAATGTCTAAGCAGATAAAAGAATATGGA
TTCAAAATCTCGCCACGAGAGGGAATTGTACCAAGAGATGAGAGATACACTAGAGCAGAG
ATTATGGAGTTCATTGACTTCATAATTGCAGCTCCTGAAAACAGAAGCCGGACGCTATCG
TTCCTGCGGCGCATCGAGGCAGCTTCTATTGATGATTCTCCTCCACCGCCTTCACTGCCA
GGAGGGATGGGTGTTTCGTTGTTGAAGCGTCTTCGTTTGGATTGGATAACTGTTTGTTGT
CTAGGATGTGCAGTTGCTCTTTACCCTTTCTACCGCAGAGTATGA

Peptide Sequence

PEP ID

Os12t0621900-03
PEP Infomation

pep chromosome:IRGSP-1.0:12:26551430:26555878:1 gene:Os12g0621900 transcript:Os12t0621900-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-01);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-02);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-03);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-04)
Sequence

MPLRPPPPPQGFLTAYPSAAFPPVKRPHEDDLGAGDVLTFRFHSLAVLKLFDRIREYRLH
DYRYQATRGWYSSGTAPEDALLPCAVARPPRMYGCVIGVQRGRTVEVVDTSDILLDTDPG
TLDRDLLKKKLETYKKAFPGLAILGWYSIDTHVTNTDMETNQALMDASGTTFYLLFNPAM
NLSLKDLPVTIYEKVHSTNRSPTPLIFVQGKYKTETVEAERISLDHTCPVVSDVSVPPLV
GKGQHANIMQTSGFKLMLFEIPSGFAMFEVSQELIARPKDIWARFAYQDDITNVIVTLGS
IQIHNKSVARDIIVGPGDELKEFILSFCTHNYLIVQDVELKDVIEKKLNIYCYCNPTVVG
ELTWGLNYVLHKLLPQEQSLTHEPYLPLSKAMSKQIKEYGFKISPREGIVPRDERYTRAE
IMEFIDFIIAAPENRSRTLSFLRRIEAASIDDSPPPPSLPGGMGVSLLKRLRLDWITVCC
LGCAVALYPFYRRV

Transcript Sequence

Transcript ID

Os12t0621900-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:26551430:26555878:1 gene:Os12g0621900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-01);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-02);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-03);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-04)
Sequence

GCCCTAAAACTCAAGGGTACCCCAAATTCCCCATCGCCGCCGCCCCCGATCCGGCGATGC
CGCTGCGCCCGCCGCCCCCGCCTCAGGGATTCCTCACCGCGTATCCATCCGCAGCTTTCC
CTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGTGCTGACCTTCAGGT
TCCACTCCCTCGCCGTCTTGAAATTATTCGACCGCATCCGCGAGTACCGTCTGCACGATT
ACCGGTACCAGGCAACGCGAGGCTGGTACAGCTCCGGGACGGCGCCGGAGGATGCTCTTC
TTCCCTGTGCGGTTGCTCGACCACCGAGGATGTATGGGTGCGTGATCGGGGTGCAGCGCG
GTCGGACGGTGGAGGTCGTCGACACCTCCGACATCTTGCTCGACACCGACCCCGGAACCC
TCGACCGCGACTTGTTGAAGAAGAAGCTCGAGACCTACAAGAAGGCGTTCCCTGGCTTGG
CCATTCTTGGGTGGTACTCCATTGACACTCATGTGACGAACACCGATATGGAAACCAACC
AGGCTTTGATGGATGCTAGTGGAACAACCTTTTATCTTCTATTCAATCCTGCAATGAACC
TTTCCCTGAAGGATCTCCCAGTGACTATTTATGAAAAAGTGCACTCTACCAATAGGAGTC
CCACTCCGTTAATCTTTGTCCAAGGCAAATATAAAACTGAGACTGTAGAGGCAGAGAGGA
TATCTTTAGACCATACGTGTCCTGTAGTTTCTGATGTTAGTGTGCCACCTCTTGTTGGAA
AAGGGCAACATGCAAATATTATGCAGACTTCTGGATTTAAGCTGATGCTGTTTGAAATTC
CTTCTGGTTTCGCGATGTTTGAAGTTTCACAGGAACTGATTGCACGCCCTAAGGACATAT
GGGCACGATTTGCTTATCAGGATGACATTACAAATGTTATTGTTACCCTGGGTTCTATTC
AGATCCATAACAAATCTGTTGCTAGGGATATTATTGTTGGTCCTGGTGACGAACTGAAAG
AATTTATCCTAAGCTTTTGCACTCACAACTACTTAATTGTTCAAGATGTAGAGCTTAAAG
ATGTTATCGAGAAGAAACTTAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAAT
TGACATGGGGACTGAACTATGTCCTACATAAGTTGTTACCTCAAGAGCAAAGTTTAACTC
ATGAGCCTTATCTTCCACTAAGCAAGGCAATGTCTAAGCAGATAAAAGAATATGGATTCA
AAATCTCGCCACGAGAGGGAATTGTACCAAGAGATGAGAGATACACTAGAGCAGAGATTA
TGGAGTTCATTGACTTCATAATTGCAGCTCCTGAAAACAGAAGCCGGACGCTATCGTTCC
TGCGGCGCATCGAGGCAGCTTCTATTGATGATTCTCCTCCACCGCCTTCACTGCCAGGAG
GGATGGGTGTTTCGTTGTTGAAGCGTCTTCGTTTGGATTGGATAACTGTTTGTTGTCTAG
GATGTGCAGTTGCTCTTTACCCTTTCTACCGCAGAGTATGAATGACTTTGTTATAAAATT
CACTATGTTTTGAGGACAAATACATATTCTCTGACCTGCTTGATTAGTACCAAATTAATC
CTTAATCAAAGACCATTTTATGT