Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0621500-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:26507440:26513551:1 gene:Os12g0621500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA290 description:Similar to IRE. (Os12t0621500-01)
Sequence	ATGGAGAAGGACAGCGGCGGCGGCGGCGGTGGGTTGGCGCGGCGGTTGATGCTGGATGCG AGCGGGAGGGAGATGGACTCGCCGCGGTTCAGGGCGATCCTGCGGGCGACGAGCGGGCGG CGGAAGCGGGCGCCCGACGTGAAGAGCTTCTCGCACGAGCTCAACATTCGCGGGCCGCTC CTCCACCCGCTGCAGCAGCGGAAGCCGCGCGGGTGCGTGAACAGCCCGGAGGAGTTCATC GGCGCCATCAGGACAAAGTTCATCAGGCTCAAGGAGGAGGTCGACGCCGAGCTCGGGGTG TTCGCCGGGGACCTCGTCGGCGCGCTCGACAAGGCCGACGGGGACGAGGAGCGCGTCGCG CTCGAGGACCTGCTCGTCGTCGCGCAGCGGTGCGCCGAGATGAGCCCCGAGGAGCTCTGG GTCAAGTGCGAGTGCATCGTCCAGGGCCTCGACGACCGCCGCCAGGAGCTCACCGCCGGC GTCCTCAAGCAGGCGCACACCCGCGTCCTCTTCATCCTCACGCGCTGCACCCGCCTCCTC CAGTTCCGCAAGGAAGGCGGCGGATACGTCGCCGCCGACGACAAGCAGCACGTCCTCAGC CTGCACCAGCTCAGCGACCTCGGCCTCTACCCCTTCAAGGTCGCCGGCGGCTCCAGCGAG CTCGGCCGCAAGAGCACCTCCAGCTTGACCGAGCTCAAGGAGAGGCTCATCAGGCGGAGG ATGCTGGAGCACAAGCAACTCACCCTCGACTTCTCGGCGGGCCGTGTCATTTCGTCAGAC ACCGGCGGCGATTCCCCGGGCAGCGGCGGCAAGATCTCATCCTGGAAGAAGCTTCCATCC CCTGCCGAGAAGACCCTGCACAAGGTTACGGAACCGACAACGGAGGAGAAGACCACCCCT ACAAAGAAGAAGGCCATTACGAGGAACAAGGTCGCCGTGGATGAGATCGTCGAGAGGATT GACGCGGCTAGCATTCACCCCGACGGATTGTCATATCTTGGGGACTCTGCTGTGAAGCTC GAGGTTCCATCTGGGTTCCCAGAGGCTCAGCAGATCATCGTCGACGGGAAGCCGAGGATG ATATGCAGGATCTGTGACTTTGAGATCCCCATGGTATGCGCAGAAGGGCACTTCATAGTG TGCACATTAGCTGATCGGTGTGATTCCAAGGGCCTGAATACGGACCAGCGGCTGCAGAGG GTTGCCGAGGTGCTCGGGAGGGTTTTGGGTTGCTTTGAATCGAAGAGCCCGCAAACTGCA GAATGTAATCATAATGAGACTGCAAGAGGTAGCACGTCGAGTTTAACGGAATCCGATGGA TCCATGGATCATGATATTCTGTCTCATCTGTTGACAGTGCCATCGACAGAGTTGTTTTCA GAGGGAGCACTCACACCAGCGTCAGGCAGCATGCCACAGTCACCATTGCTGACACCAAGA ACTAGCCACGCAGAGTCACAGCTGACTAAACACAAGGCATTCGTGGAACTAGAGAACTTT CAGCAGGTTGAAAGCTTAATGACTATTGCTAGAGGCATCGAGAGAATAAAAAACTCTGAG TACAACTCGCTTGAGGACTTGAGCTCTTATCTAGAAGATCTAAATGCTGTCATTGACACA AGAAAAGTGGATGCCCTTGTTGTGGAGACATTTGGAAGAAGGATAGCTAAATTACTACAG GAGAAATTTATTCAACTATGCGGACAAATAGAGGACTCAAACACTGATTCATTAGGTTCA ATAGACGAAGATGGTCCTATGGAGAGTAGTGTAAGCTCGAGAACAAGCCAGATGAATGGT AAATTCAAAGATCGTACCTCAATTGAGGACTTTGAAATTATAAAGCCAATCAGCCGTGGT GCATTTGGGCGTGTGTTTCTTGCAAAGAAAAGGGTAACAGGAGACCTTTTTGCCATCAAG GTGCTCAAAAAGGCTGATATGATCCGCAAGAATGCAGTGGAAAGCATCTTGGCAGAACGT GATATCTTAATATCAGCTCGCAACCCATTTGTGGTTCGATTTTTCTACTCCTTCACATGT AGGGAAAACCTTTATCTTGTTATGGAGTACTTGAATGGAGGAGATCTGTATTCCCTCTTG AGAAACCTAGGTTGTTTAGATGAAGATATGGCAAGGACGTATATGGCTGAACTTGTTCTT GCTTTGGAGTATCTGCATTCTATGAATGTGATTCATCGTGATTTGAAGCCCGATAACCTT TTGATCTCCCGTGATGGCCATATAAAGTTGACTGATTTTGGGCTATCAAAAGTTGGTCTT ATCAATAGCACCGATGATTTGTCTGGTCCAGATGTCAGCAATGTTCTTGTTGGTGATCAT CAACCTGCAGATGCAGAACAACGTGCACAAAAGCGAGAGCAAAGGCAAAAACAGGCAGCT GTGGGTACTCCAGACTATTTGGCCCCTGAGATACTGCTAGGGATGACCCATGGTCCAACT GCAGATTGGTGGTCAGTTGGCGTCATTCTCTTTGAGCTTCTTGTGGGAATTCCTCCATTC AACGCTGAGCATCCGCAGATAATATTTGATAATATAATGAATCGGGAAATACCTTGGCCA CAAGTACCAGAGGAACTGAGTTTCGAAGCATATGACTTGATTGACAAGTTGCTAATTGAA AACCCTGTACAAAGATTAGGAGCAACTGGTGCTGGAGAGGTAAAGGCTCATCCTTTCTTC AAAGATATAAATTGGGATATGATTGCCAGACAACAGGCTGCATTTATTCCTTCTACAGAT GATGAATATGATACAAGTTATTTTGCCTGTCGTCACACATGGGACGACCAAGTGAATGTA GCCTCTAACGACTACGACGATAGAAGTGAAACTAGTAGCATGAGTTGTGGCAGTAGTCCA CACAGTTGTGATTATGAGGAAGATGCGGATGAATTTGGTAGCATGGAAGAATTCGGAGCT CCATCACTGTCAGTGAAATATTCTTTCAGCAATTTCTCATTCAAGAACATTTCTCAGTTA GCATCCATGAACTATGATCTGATCACAAAGCATAACGAGGATCCCCTACAGTCTTCAAAA TCTTGA

Peptide Sequence

PEP ID	Os12t0621500-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:26507440:26513551:1 gene:Os12g0621500 transcript:Os12t0621500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA290 description:Similar to IRE. (Os12t0621500-01)
Sequence	MEKDSGGGGGGLARRLMLDASGREMDSPRFRAILRATSGRRKRAPDVKSFSHELNIRGPL LHPLQQRKPRGCVNSPEEFIGAIRTKFIRLKEEVDAELGVFAGDLVGALDKADGDEERVA LEDLLVVAQRCAEMSPEELWVKCECIVQGLDDRRQELTAGVLKQAHTRVLFILTRCTRLL QFRKEGGGYVAADDKQHVLSLHQLSDLGLYPFKVAGGSSELGRKSTSSLTELKERLIRRR MLEHKQLTLDFSAGRVISSDTGGDSPGSGGKISSWKKLPSPAEKTLHKVTEPTTEEKTTP TKKKAITRNKVAVDEIVERIDAASIHPDGLSYLGDSAVKLEVPSGFPEAQQIIVDGKPRM ICRICDFEIPMVCAEGHFIVCTLADRCDSKGLNTDQRLQRVAEVLGRVLGCFESKSPQTA ECNHNETARGSTSSLTESDGSMDHDILSHLLTVPSTELFSEGALTPASGSMPQSPLLTPR TSHAESQLTKHKAFVELENFQQVESLMTIARGIERIKNSEYNSLEDLSSYLEDLNAVIDT RKVDALVVETFGRRIAKLLQEKFIQLCGQIEDSNTDSLGSIDEDGPMESSVSSRTSQMNG KFKDRTSIEDFEIIKPISRGAFGRVFLAKKRVTGDLFAIKVLKKADMIRKNAVESILAER DILISARNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEDMARTYMAELVL ALEYLHSMNVIHRDLKPDNLLISRDGHIKLTDFGLSKVGLINSTDDLSGPDVSNVLVGDH QPADAEQRAQKREQRQKQAAVGTPDYLAPEILLGMTHGPTADWWSVGVILFELLVGIPPF NAEHPQIIFDNIMNREIPWPQVPEELSFEAYDLIDKLLIENPVQRLGATGAGEVKAHPFF KDINWDMIARQQAAFIPSTDDEYDTSYFACRHTWDDQVNVASNDYDDRSETSSMSCGSSP HSCDYEEDADEFGSMEEFGAPSLSVKYSFSNFSFKNISQLASMNYDLITKHNEDPLQSSK S

Transcript Sequence

Transcript ID	Os12t0621500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:26507440:26513551:1 gene:Os12g0621500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA290 description:Similar to IRE. (Os12t0621500-01)
Sequence	ATGGGGCGTTTGCTATTTTAGTGCGAAGAACACGGCGGCGACGTGCGCGAGACGAAGCCC CCCGCGGGTTTGATTTGATTTGATTTTGATTTTGATTTGCTTCTTCTTGGGCGTCTCGGA GGCGTCGCATCGCGATCGATCATGGAGAAGGACAGCGGCGGCGGCGGCGGTGGGTTGGCG CGGCGGTTGATGCTGGATGCGAGCGGGAGGGAGATGGACTCGCCGCGGTTCAGGGCGATC CTGCGGGCGACGAGCGGGCGGCGGAAGCGGGCGCCCGACGTGAAGAGCTTCTCGCACGAG CTCAACATTCGCGGGCCGCTCCTCCACCCGCTGCAGCAGCGGAAGCCGCGCGGGTGCGTG AACAGCCCGGAGGAGTTCATCGGCGCCATCAGGACAAAGTTCATCAGGCTCAAGGAGGAG GTCGACGCCGAGCTCGGGGTGTTCGCCGGGGACCTCGTCGGCGCGCTCGACAAGGCCGAC GGGGACGAGGAGCGCGTCGCGCTCGAGGACCTGCTCGTCGTCGCGCAGCGGTGCGCCGAG ATGAGCCCCGAGGAGCTCTGGGTCAAGTGCGAGTGCATCGTCCAGGGCCTCGACGACCGC CGCCAGGAGCTCACCGCCGGCGTCCTCAAGCAGGCGCACACCCGCGTCCTCTTCATCCTC ACGCGCTGCACCCGCCTCCTCCAGTTCCGCAAGGAAGGCGGCGGATACGTCGCCGCCGAC GACAAGCAGCACGTCCTCAGCCTGCACCAGCTCAGCGACCTCGGCCTCTACCCCTTCAAG GTCGCCGGCGGCTCCAGCGAGCTCGGCCGCAAGAGCACCTCCAGCTTGACCGAGCTCAAG GAGAGGCTCATCAGGCGGAGGATGCTGGAGCACAAGCAACTCACCCTCGACTTCTCGGCG GGCCGTGTCATTTCGTCAGACACCGGCGGCGATTCCCCGGGCAGCGGCGGCAAGATCTCA TCCTGGAAGAAGCTTCCATCCCCTGCCGAGAAGACCCTGCACAAGGTTACGGAACCGACA ACGGAGGAGAAGACCACCCCTACAAAGAAGAAGGCCATTACGAGGAACAAGGTCGCCGTG GATGAGATCGTCGAGAGGATTGACGCGGCTAGCATTCACCCCGACGGATTGTCATATCTT GGGGACTCTGCTGTGAAGCTCGAGGTTCCATCTGGGTTCCCAGAGGCTCAGCAGATCATC GTCGACGGGAAGCCGAGGATGATATGCAGGATCTGTGACTTTGAGATCCCCATGGTATGC GCAGAAGGGCACTTCATAGTGTGCACATTAGCTGATCGGTGTGATTCCAAGGGCCTGAAT ACGGACCAGCGGCTGCAGAGGGTTGCCGAGGTGCTCGGGAGGGTTTTGGGTTGCTTTGAA TCGAAGAGCCCGCAAACTGCAGAATGTAATCATAATGAGACTGCAAGAGGTAGCACGTCG AGTTTAACGGAATCCGATGGATCCATGGATCATGATATTCTGTCTCATCTGTTGACAGTG CCATCGACAGAGTTGTTTTCAGAGGGAGCACTCACACCAGCGTCAGGCAGCATGCCACAG TCACCATTGCTGACACCAAGAACTAGCCACGCAGAGTCACAGCTGACTAAACACAAGGCA TTCGTGGAACTAGAGAACTTTCAGCAGGTTGAAAGCTTAATGACTATTGCTAGAGGCATC GAGAGAATAAAAAACTCTGAGTACAACTCGCTTGAGGACTTGAGCTCTTATCTAGAAGAT CTAAATGCTGTCATTGACACAAGAAAAGTGGATGCCCTTGTTGTGGAGACATTTGGAAGA AGGATAGCTAAATTACTACAGGAGAAATTTATTCAACTATGCGGACAAATAGAGGACTCA AACACTGATTCATTAGGTTCAATAGACGAAGATGGTCCTATGGAGAGTAGTGTAAGCTCG AGAACAAGCCAGATGAATGGTAAATTCAAAGATCGTACCTCAATTGAGGACTTTGAAATT ATAAAGCCAATCAGCCGTGGTGCATTTGGGCGTGTGTTTCTTGCAAAGAAAAGGGTAACA GGAGACCTTTTTGCCATCAAGGTGCTCAAAAAGGCTGATATGATCCGCAAGAATGCAGTG GAAAGCATCTTGGCAGAACGTGATATCTTAATATCAGCTCGCAACCCATTTGTGGTTCGA TTTTTCTACTCCTTCACATGTAGGGAAAACCTTTATCTTGTTATGGAGTACTTGAATGGA GGAGATCTGTATTCCCTCTTGAGAAACCTAGGTTGTTTAGATGAAGATATGGCAAGGACG TATATGGCTGAACTTGTTCTTGCTTTGGAGTATCTGCATTCTATGAATGTGATTCATCGT GATTTGAAGCCCGATAACCTTTTGATCTCCCGTGATGGCCATATAAAGTTGACTGATTTT GGGCTATCAAAAGTTGGTCTTATCAATAGCACCGATGATTTGTCTGGTCCAGATGTCAGC AATGTTCTTGTTGGTGATCATCAACCTGCAGATGCAGAACAACGTGCACAAAAGCGAGAG CAAAGGCAAAAACAGGCAGCTGTGGGTACTCCAGACTATTTGGCCCCTGAGATACTGCTA GGGATGACCCATGGTCCAACTGCAGATTGGTGGTCAGTTGGCGTCATTCTCTTTGAGCTT CTTGTGGGAATTCCTCCATTCAACGCTGAGCATCCGCAGATAATATTTGATAATATAATG AATCGGGAAATACCTTGGCCACAAGTACCAGAGGAACTGAGTTTCGAAGCATATGACTTG ATTGACAAGTTGCTAATTGAAAACCCTGTACAAAGATTAGGAGCAACTGGTGCTGGAGAG GTAAAGGCTCATCCTTTCTTCAAAGATATAAATTGGGATATGATTGCCAGACAACAGGCT GCATTTATTCCTTCTACAGATGATGAATATGATACAAGTTATTTTGCCTGTCGTCACACA TGGGACGACCAAGTGAATGTAGCCTCTAACGACTACGACGATAGAAGTGAAACTAGTAGC ATGAGTTGTGGCAGTAGTCCACACAGTTGTGATTATGAGGAAGATGCGGATGAATTTGGT AGCATGGAAGAATTCGGAGCTCCATCACTGTCAGTGAAATATTCTTTCAGCAATTTCTCA TTCAAGAACATTTCTCAGTTAGCATCCATGAACTATGATCTGATCACAAAGCATAACGAG GATCCCCTACAGTCTTCAAAATCTTGAGAGTATGCACTCCCTCGACATGGCAGGCTGCAG GAAGGAGCTTCCTCAACAGTGAACTCCCACAGTTTTGCTACAATGGTTTGGTCGATGACA AATTGATAATAGGAATTTCCTCGGCAAGACTGGTTCAAGTAATTTTTTTTCTCTTCAGTT TCTCTCCAGTGAGCAAAGAGGTGCATTTCTTCATGGCAAATGCAATCTGTAATCATTGAA GAAGAATGGATAGGTAGCACAGGAATCATAGGAAAGAATGGCACCCACTGTTTTGGCAAA ATAGGTATACCTTTCTCAAAACTTGTGAGTGGTGCAAGATTAAGTTGTTTGGTACTTTGG TGCAGTGTTTTTTTGCATCAATAGTAGAAAAAAAAGTTTATAGCATATTTTACCCTATTG TATTTATTCTCATATTTATTTTATTGCTGTTGAGACCCATTACTAGCTG