Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0616900-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:26200242:26203412:1 gene:Os12g0616900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment). (Os12t0616900-01)
Sequence	ATGGCCACCGCTGCCGCCGCCTCGCTGCAGTACGCGCTGCACGGCGCCGCCTCCGCCTCC GCCAAGCCCAGATCCGCCGCGCCAGGCAGGAGCGTGCGCGTGGTCGCGGCGAGGAGGTCG GTGCGGGCGCGCGGAGGGGCGGTGGTAGCGCGCGCCGCGGTTACAGCGAGTGCGGATGCG ACGGCGGAATCCAAGTCCGGCGGTCATGAGGTCCTGTTGTTTGAGGCCCTTCGAGAAGCA TTGATAGAAGAGATGAAAGAAGATCCTACAGTTTGTGTATTTGGTGAAGATGTTGGTCAC TATGGAGGTTCATATAAGGTGACCAAGGGCTTGGCTGAGATGTTTGGAGACCTTCGGGTT CTTGATACCCCTATTGCTGAGAATTCTTTCGCTGGCATGGGAGTTGGAGCAGCAATGAAG GGGCTAAGGCCAATTGTTGAAGGCATGAACATGGGTTTCCTTCTCCTTGCTTACAATCAG ATCTCAAACAATTGTGGTATGCTTCATTATACCTCAGGTGGCCAGTTCAAGATCCCGATT GTGATTCGAGGCCCTGGTGGTGTTGGTCGCCAGCTTGGTGCTGAGCATTCACAACGTCTC GAATCGTACTTCCAGTCCATTCCTGGACTTCAAATGGTTGCTTGCTCTACTCCTTACAAT GCTAAGGGCCTGATGAAGGCTGCCATAAGGAGTGAGAACCCTGTGGTGCTGTTCGAGCAT GTCCTTCTGTACAACCTGAAGGAGAAGATCCCTGATGAGGAATACATTTGCTGCTTGGAG GAGGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTCACGTACTCTCGCATGAGG TACCATGTGATGCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATCCGGAGGTCATT GATATCAGGTCGCTGAAACCATTCGATCTGCACACGATAGGGAACTCCATTAAGAAGACC CACCGCGTTCTGATTGTGGAGGAGTGCATGCGAACGGGTGGTATCGGCGCCAGCCTGAGG TCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTGTCATCA CAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAGCCTGCC CAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAA

Peptide Sequence

PEP ID	Os12t0616900-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:26200242:26203412:1 gene:Os12g0616900 transcript:Os12t0616900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment). (Os12t0616900-01)
Sequence	MATAAAASLQYALHGAASASAKPRSAAPGRSVRVVAARRSVRARGGAVVARAAVTASADA TAESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRV LDTPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIPI VIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEH VLLYNLKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVI DIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSS QDVPTPYAATLEDATVVQPAQIVAAVEQICQ

Transcript Sequence

Transcript ID	Os12t0616900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:26200242:26203412:1 gene:Os12g0616900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment). (Os12t0616900-01)
Sequence	AGCAGCCGCCACCGCCGCCGGAATCCGAGACCTCTCGCCGTCCCGCCACGCGCGCGCGCG AGCGAGCAAAGAGAGAGAGAGAAATGGCCACCGCTGCCGCCGCCTCGCTGCAGTACGCGC TGCACGGCGCCGCCTCCGCCTCCGCCAAGCCCAGATCCGCCGCGCCAGGCAGGAGCGTGC GCGTGGTCGCGGCGAGGAGGTCGGTGCGGGCGCGCGGAGGGGCGGTGGTAGCGCGCGCCG CGGTTACAGCGAGTGCGGATGCGACGGCGGAATCCAAGTCCGGCGGTCATGAGGTCCTGT TGTTTGAGGCCCTTCGAGAAGCATTGATAGAAGAGATGAAAGAAGATCCTACAGTTTGTG TATTTGGTGAAGATGTTGGTCACTATGGAGGTTCATATAAGGTGACCAAGGGCTTGGCTG AGATGTTTGGAGACCTTCGGGTTCTTGATACCCCTATTGCTGAGAATTCTTTCGCTGGCA TGGGAGTTGGAGCAGCAATGAAGGGGCTAAGGCCAATTGTTGAAGGCATGAACATGGGTT TCCTTCTCCTTGCTTACAATCAGATCTCAAACAATTGTGGTATGCTTCATTATACCTCAG GTGGCCAGTTCAAGATCCCGATTGTGATTCGAGGCCCTGGTGGTGTTGGTCGCCAGCTTG GTGCTGAGCATTCACAACGTCTCGAATCGTACTTCCAGTCCATTCCTGGACTTCAAATGG TTGCTTGCTCTACTCCTTACAATGCTAAGGGCCTGATGAAGGCTGCCATAAGGAGTGAGA ACCCTGTGGTGCTGTTCGAGCATGTCCTTCTGTACAACCTGAAGGAGAAGATCCCTGATG AGGAATACATTTGCTGCTTGGAGGAGGCCGAGATGGTACGTCCAGGTGAGCATGTGACCA TCCTCACGTACTCTCGCATGAGGTACCATGTGATGCAGGCAGCCAAGACACTGGTGAACA AAGGGTACGATCCGGAGGTCATTGATATCAGGTCGCTGAAACCATTCGATCTGCACACGA TAGGGAACTCCATTAAGAAGACCCACCGCGTTCTGATTGTGGAGGAGTGCATGCGAACGG GTGGTATCGGCGCCAGCCTGAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATG CCCCCATCATGTGCTTGTCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGG ACGCAACCGTCGTGCAGCCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAAT TCAATTCTTAATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTG TTCGTCTTGTCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAAC ACTAAAGTTATACCCTTACCCATGCATTATTGGTC