Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0615700-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:26120373:26122888:1 gene:Os12g0615700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to TRANSPARENT TESTA 12 protein. (Os12t0615700-01)
Sequence	ATGGCGGAAACAAGCAGTGCACGGTCGCCATTGCTGGACGTCGATGAGTCTTCGGGTGCG TCGGAGGAGCTGCTGCGCCGGGAGCCCGTGCCGCGGAGCGTTCTGTCGCGGCTGGCGGCA TGGGAGGCCGGCAACCTGTGGCGCATCTCGTGGGCGTCCATCCTCATCACGCTCCTCAGC TTCACTCTCAGCCTCGTCACCCAGATGTTCGTCGGCCACCTCGGTGAGCTCGAGCTCGCC GGCGCCTCCATCACCAACATTGGCATTCAGGGCCTAGCCTATGGCATCATGATTGGCATG GCGAGCGCGGTGCAGACGGTGTGCGGCCAGGCGTACGGCGCCAGGAAGTTCAGGGCCATG GGCATTGTGTGCCAGAGGGCGCTGGTGCTCCAGTTCGCGACAGCCATCGTCATCGCATTC CTTTACTGGTACGCCGGCCCGTTCCTGCGGCTCATTGGGCAGGCCGCGGATGTGGCGGCA GCGGGGCAGCTGTACGCGCGCGGCCTGGTGCCTCAGCTGCTCGCGTTCGCGCTCTTCTGC CCGATGCAGAGGTTCCTGCAGGCCCAGAACATCGTCAACCCCGTTGCCTACATCACCATG GCCGTGCTGATCTTCCACATCCTCATATCGTGGCTGACCGTGTTCGTGCTCGGCTTTGGC CTCCTCGGCGCGGCACTGACGCTGAGCTTCTCTTGGTGGGTGCTCGTGGCATTGACATGG GGGCTCATGGTCTGGACTCCGGCTTGTAAGGAGACGTGGACTGGATTGTCCGTGCTCGCG TTCAGAGGCCTCTGGGGATATGCCAAGCTTGCCTTCGCGTCAGCCGTCATGCTAGCGTTG GAGATTTGGTATGTGCAAGGATTTGTGCTTCTTACTGGCTTCCTCCCCGACCCAGAGATT GCACTTGATTCGCTCTCTATCTGCATCAATTACTGGAATTGGGACTTCCAGATCATGCTT GGTTTAAGCTATGCGGCCAGTATTCGTGTCGGTAATGAGCTTGGAGCTGGCCATCCAAAT GTGGCAAGGTTCTCGGTCTTCGTGGTTATCACAGCAAGCGTTGCCTTCAGCATCCTGGCT ACAATTCTAGTCCTAGTTCTCAGGTATCCCCTGAGCACGCTCTACACAAGCAGCACCACC GTGATCGAGGCTGTCATCAAACTGACACCGTTGCTGTCCATCAGCATCTTCTTGAATGGA ATTCAGCCAATCCTCTCAGGAGTGGCCGTTGGTAGTGGATGGCAGGTGGTGGTTGCCTAT GTCAATGTTGGTGCCTACTACCTGATTGGGCTGCCAATTGGATGCGTCCTTGGATACAAA ACAAGCCTGGGGGCAGCTGGGATCTGGTGGGGCTTGATCATAGGAGTATCTGTGCAAACG GTAGCTCTGATCATCATCACTGCCAGGACCAACTGGGACAATGAGGTGATGAAGGCGATT CAGCGACTGCGGCAAACCGCCGTGGATGATGGCACGGTTCCCATCGTCGACGACATCGAG TGA

Peptide Sequence

PEP ID	Os12t0615700-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:26120373:26122888:1 gene:Os12g0615700 transcript:Os12t0615700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to TRANSPARENT TESTA 12 protein. (Os12t0615700-01)
Sequence	MAETSSARSPLLDVDESSGASEELLRREPVPRSVLSRLAAWEAGNLWRISWASILITLLS FTLSLVTQMFVGHLGELELAGASITNIGIQGLAYGIMIGMASAVQTVCGQAYGARKFRAM GIVCQRALVLQFATAIVIAFLYWYAGPFLRLIGQAADVAAAGQLYARGLVPQLLAFALFC PMQRFLQAQNIVNPVAYITMAVLIFHILISWLTVFVLGFGLLGAALTLSFSWWVLVALTW GLMVWTPACKETWTGLSVLAFRGLWGYAKLAFASAVMLALEIWYVQGFVLLTGFLPDPEI ALDSLSICINYWNWDFQIMLGLSYAASIRVGNELGAGHPNVARFSVFVVITASVAFSILA TILVLVLRYPLSTLYTSSTTVIEAVIKLTPLLSISIFLNGIQPILSGVAVGSGWQVVVAY VNVGAYYLIGLPIGCVLGYKTSLGAAGIWWGLIIGVSVQTVALIIITARTNWDNEVMKAI QRLRQTAVDDGTVPIVDDIE

Transcript Sequence

Transcript ID	Os12t0615700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:26120373:26122888:1 gene:Os12g0615700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to TRANSPARENT TESTA 12 protein. (Os12t0615700-01)
Sequence	TGAAAATTCAAAAGAGCTATGAATCTTTGGCAGGTCTATAAATGCCTTGGTCCATTATGA ATTATGTTGAGCAAAGCACTTAAGGGGAGGAGACAATGGCGGAAACAAGCAGTGCACGGT CGCCATTGCTGGACGTCGATGAGTCTTCGGGTGCGTCGGAGGAGCTGCTGCGCCGGGAGC CCGTGCCGCGGAGCGTTCTGTCGCGGCTGGCGGCATGGGAGGCCGGCAACCTGTGGCGCA TCTCGTGGGCGTCCATCCTCATCACGCTCCTCAGCTTCACTCTCAGCCTCGTCACCCAGA TGTTCGTCGGCCACCTCGGTGAGCTCGAGCTCGCCGGCGCCTCCATCACCAACATTGGCA TTCAGGGCCTAGCCTATGGCATCATGATTGGCATGGCGAGCGCGGTGCAGACGGTGTGCG GCCAGGCGTACGGCGCCAGGAAGTTCAGGGCCATGGGCATTGTGTGCCAGAGGGCGCTGG TGCTCCAGTTCGCGACAGCCATCGTCATCGCATTCCTTTACTGGTACGCCGGCCCGTTCC TGCGGCTCATTGGGCAGGCCGCGGATGTGGCGGCAGCGGGGCAGCTGTACGCGCGCGGCC TGGTGCCTCAGCTGCTCGCGTTCGCGCTCTTCTGCCCGATGCAGAGGTTCCTGCAGGCCC AGAACATCGTCAACCCCGTTGCCTACATCACCATGGCCGTGCTGATCTTCCACATCCTCA TATCGTGGCTGACCGTGTTCGTGCTCGGCTTTGGCCTCCTCGGCGCGGCACTGACGCTGA GCTTCTCTTGGTGGGTGCTCGTGGCATTGACATGGGGGCTCATGGTCTGGACTCCGGCTT GTAAGGAGACGTGGACTGGATTGTCCGTGCTCGCGTTCAGAGGCCTCTGGGGATATGCCA AGCTTGCCTTCGCGTCAGCCGTCATGCTAGCGTTGGAGATTTGGTATGTGCAAGGATTTG TGCTTCTTACTGGCTTCCTCCCCGACCCAGAGATTGCACTTGATTCGCTCTCTATCTGCA TCAATTACTGGAATTGGGACTTCCAGATCATGCTTGGTTTAAGCTATGCGGCCAGTATTC GTGTCGGTAATGAGCTTGGAGCTGGCCATCCAAATGTGGCAAGGTTCTCGGTCTTCGTGG TTATCACAGCAAGCGTTGCCTTCAGCATCCTGGCTACAATTCTAGTCCTAGTTCTCAGGT ATCCCCTGAGCACGCTCTACACAAGCAGCACCACCGTGATCGAGGCTGTCATCAAACTGA CACCGTTGCTGTCCATCAGCATCTTCTTGAATGGAATTCAGCCAATCCTCTCAGGAGTGG CCGTTGGTAGTGGATGGCAGGTGGTGGTTGCCTATGTCAATGTTGGTGCCTACTACCTGA TTGGGCTGCCAATTGGATGCGTCCTTGGATACAAAACAAGCCTGGGGGCAGCTGGGATCT GGTGGGGCTTGATCATAGGAGTATCTGTGCAAACGGTAGCTCTGATCATCATCACTGCCA GGACCAACTGGGACAATGAGGTGATGAAGGCGATTCAGCGACTGCGGCAAACCGCCGTGG ATGATGGCACGGTTCCCATCGTCGACGACATCGAGTGATCTGCCTGAATGGAACTGAACA GGATTACAGGACTGATCTAGAGCTCAGCTTGGCCATCCTAGAAGCTCCAAGTTGGACATG GCAAAGATTTTCTTGGGTTGTTTACCCTTTCGGCTTCAGTTTATGTAGCATCTCAGTAAC TCAGTTCCAATTTGATTAGTGGACGAGAAAATTTGGTTTAGTTTCGTACAACTAAGATGC TTTTGTAGTGTGTTCTTGCTCCGAATTGGTATTCATGAATATTTTCCT