Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0613700-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:26002370:26008343:-1 gene:Os12g0613700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 6B description:Transcriptional factor B3 family protein. (Os12t0613700-01);Similar to Auxin response factor 25. (Os12t0613700-02)
Sequence	ATGAAGCTCTCTCCGCCGGCGTCGGCGGATATGCCGCAGGCCTTGCCGGAGAACGACGGG GAACAAAGATGTCTGAACTCGGAGCTGTGGCATGCATGCGCTGGGCCCCTTGTGTCTTTG CCAGTGGTCAGGAGCAGGGTCGTCTACTTTCCACAGGGCCATAGCGAGCAGGTTGCGGCA TCAACTAATAAGGAAGTTGATGCTCAAATCCCAAATTATCCAAACTTACCTCCTCAGTTA ATCTGCCAGCTTCATAATGTCACCATGCATGCTGATGCAGAGACAGATGAAGTTTATGCT CAGATGACATTGCAACCATTGAGCCCGGAAGAGCAAAAGGAGCCTTTCCTTCCAATGGAG TTGGGTGCTGCTAGCAAGCAACCCACTAATTACTTCTGCAAGACATTGACTGCAAGTGAC ACGAGCACTCATGGTGGTTTCTCTGTTCCCCGCCGGGCAGCTGAGAAAGTCTTCCCTCCA CTAGATTTTTCACAGCAGCCTCCGGCACAGGAGCTGATTGCAAGAGATTTGCATGATAAT GAATGGAAATTTCGCCATATATTTCGTGGTCAGCCTAAAAGGCATCTCCTGACAACAGGC TGGAGTGTGTTTGTGAGTGCGAAAAGACTAGTAGCAGGAGACTCTGTTATATTTATCTGG AATGATAACAATCAACTTCTTTTGGGAATACGTCGTGCAAATCGCCAACAGACTGTTATG CCCTCTTCCGTGTTGTCAAGCGATAGCATGCATATAGGTCTTCTTGCAGCAGCAGCTCAT GCTGCAGCCACAAATAGTCGCTTCACTATTTTCTATAACCCCAGGGCTAGCCCTTCTGAA TTTGTGATTCCATTGGCCAAGTATGTGAAAGCTGTTTACCACACACGTGTATCTGTTGGA ATGCGTTTTAGAATGCTTTTCGAGACAGAGGAGTCAAGTGTCAGGCGATACATGGGTACA ATCACCAGCATAAGTGATCTAGATTCAGTGCGCTGGCCAAACTCACACTGGCGTTCTGTT AAGGTTGGTTGGGATGAGTCCACCACTGGTGATAAACAGCCAAGGGTTTCTCTTTGGGAG ATTGAGCCTTTGACAACCTTTCCGATGTACCCCAGTGCTTTTCCTTTAAGACTTAAGCGT CCGTGGGCTTCAGGACTGCCTATGCATGGCATGTTCAATGGTGGGGGAAATGACGATTTT GCACGCTATTCTTCTCTCATGTGGCTTCGAGACGGAAATAGAGGAACCCAGTCCCTGAAT TTTCAAGGACATGGAGTCTCACCATGGCTTCAGCCAAGAATAGATTCTCCATTGCTGGGC CTTAAGCCAGACACGTACCAGCAAATGGCTGCAGCAGCACTGGAAGAAATTCGATATGGG GACCCTTCAAAGCAGCATCCAGCTACTCTGCAATACCAACAGACTCATAATCTGAACAGT GGATTAAATTCTCTGTTTGCAAGCCATGTTCTAGGGCAGGTGCAGTTTCAACCTCAGCAG TCACCCCTGCAAGTTGTTCAGCAAGGCCATTGTCAGAACACTGGTGACTCTGGGTTCCTT CAAGGTCAGCTTCCACGGCTGCAGTTGCATAACACTCAGCAGCTGCTAAAGGAGCAAGAG TTGCAGCAGCAGCAAAGACAGCATGTTTTACAAGAGCAATCTAGTCAAGAGATGCAACAG CAGCTCCCATCTAGTGATCATCATGTTGCTGATGTAGCTTCTGAGTCTGGATCTGCTCCT CAGGCACAATCATCATTGCTTAGTGGATCATCATTCTACAATCAGAACCTCTTAGAAGGA AATAGTGATCCCCCTTTACATCTACACAACAATTTCCACAACTTCTCTAACCAGGAAGCC TCAAACCTTCTTATTTTGCCTCGAAGTAGCCAATTAATGGCATCAGATGGGTGGCCTTCA AAGCGATTAACTTTAGAATCTGCTGTTCATCCTGAAGCTCCGTCCATGCACCCCAAGATT GAGAAAGTAAATCACCAGGGTATATCTCATTTTCCTGGCGCCTTTCCACCACAATCAGCA AGAGGCTGTTCCATCGTCCAGGATTGCAGGGCAGATGCTGAGAACCGCCTACTTTCATCA TCATTTGAACTCCAGGATGGCATGACAAGCATCATAACTGATGCTAACAGAGAAACTGAT ACTATGGCCATACCTTTGTTGAGATATAGTGGTGCAGATTTGACAACTGAAAACACCTTA GCAACCTCCAATTGTTTAGGTGAATCTGGAACGTTCAATCCTCTTAATAACATATCTGTA AATCCATCACAAGGAGCAACCTTTGTGAAGGTTTACAAATCAGGGTCCCTTGGGAGATCA CTTGACATCTCCAGATTCAGCAGCTACTGCGAGTTACGTAGTGAGCTTGAGCGTCTCTTT GGTCTTGAAGGCCAACTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTCGAC CGGGAAAATGACATTCTTCTCGTCGGCGACGATCCATGGCAGGAGTTTGCAAATAGCGTA TGGTGCATCAAAATACTCTCGCCACAGGAGGTGCAGCAGTTGGTTCGTGGTGGAGACGGC CTTCTGTCCTCACCTGGAGCAAGGATGCAGCAGAGCAATGCCTGCGACGACTATTCTGCA AGCCACAACATGCAGAATATCGCCGGAAACATTGCATCTGTAGCGCCTCTGGACTACTGA

Peptide Sequence

PEP ID	Os12t0613700-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:26002370:26008343:-1 gene:Os12g0613700 transcript:Os12t0613700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 6B description:Transcriptional factor B3 family protein. (Os12t0613700-01);Similar to Auxin response factor 25. (Os12t0613700-02)
Sequence	MKLSPPASADMPQALPENDGEQRCLNSELWHACAGPLVSLPVVRSRVVYFPQGHSEQVAA STNKEVDAQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPEEQKEPFLPME LGAASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDN EWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNDNNQLLLGIRRANRQQTVM PSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVG MRFRMLFETEESSVRRYMGTITSISDLDSVRWPNSHWRSVKVGWDESTTGDKQPRVSLWE IEPLTTFPMYPSAFPLRLKRPWASGLPMHGMFNGGGNDDFARYSSLMWLRDGNRGTQSLN FQGHGVSPWLQPRIDSPLLGLKPDTYQQMAAAALEEIRYGDPSKQHPATLQYQQTHNLNS GLNSLFASHVLGQVQFQPQQSPLQVVQQGHCQNTGDSGFLQGQLPRLQLHNTQQLLKEQE LQQQQRQHVLQEQSSQEMQQQLPSSDHHVADVASESGSAPQAQSSLLSGSSFYNQNLLEG NSDPPLHLHNNFHNFSNQEASNLLILPRSSQLMASDGWPSKRLTLESAVHPEAPSMHPKI EKVNHQGISHFPGAFPPQSARGCSIVQDCRADAENRLLSSSFELQDGMTSIITDANRETD TMAIPLLRYSGADLTTENTLATSNCLGESGTFNPLNNISVNPSQGATFVKVYKSGSLGRS LDISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQEFANSV WCIKILSPQEVQQLVRGGDGLLSSPGARMQQSNACDDYSASHNMQNIAGNIASVAPLDY

Transcript Sequence

Transcript ID	Os12t0613700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:26002370:26008343:-1 gene:Os12g0613700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 6B description:Transcriptional factor B3 family protein. (Os12t0613700-01);Similar to Auxin response factor 25. (Os12t0613700-02)
Sequence	GAAGAAAAAAAAAACTCGACCACCACCTCCACCACTCACACCTCGATCCGGCCATGGCGG CCTAGCCCTAGCACCTAGGGTTCGCGCCCCCACCACCCTCCCCGCCGTCTCGGAGACCGC GCGCCCCCAGCTCCCGCCTCGCTGTCGCGCCGCCTGATTCCGCCGCCGGCGCCGAATGCT ACGCCGTTTGGTGGTGGTGGTGGTCGTCGTCGCCTGATTCCGCGATCTCGTGAGCTCCGG GGGGTGCGCGGTTGCGGCGGCGGCGCCTGAGAGGAAGGCTGGACTCGTCCGCGGCGGCGG CGGCTGCGGGCTAGTGTCGGTGGCGATTTGAGGGCGGCGGTTTGGGTTAGCCGTCGCCGA GAGTGAAGGTGCTGTGTTTTGAGTGCTTGGGATGAGCTGCGTGTTGATCTGATGAACTCG GGGTCGGCGGCGTTCTTCGGTTTCTCCGCTCACTTGCTCCCGCCGTTGGCGAAAATCCGG TTCTTCGGATCGAGTTGCGGTCGCCTGGGTGTTTTTCATCAGTTTTGGGTGAAAATACTC GAGCTCTGAGGGGGGTGATTGGTTTCCAAGTTTGATTGATTTAAAGAGTTTGTGTGGAAT TTTTTCGGGGAGATGAAGGGGAGGATTTGCTGCGACGGTCCAGGTTTTGGTTAGTTGTTG AGGGAGAAAAAAATGGAAGATATTTCTGGGCGCAAGAGAGGAAGGCAGGTGTTTGCTGCT GCTGCTGGGAGCATGATGGGAAGCTGACCAGCAGCTTCTCCGGTATCCTGGTGCGGCGGA GTTTCGTGCTCTTTGGCGACGGGTGCACTGGTGATTGGAGATGAAGCTCTCTCCGCCGGC GTCGGCGGATATGCCGCAGGCCTTGCCGGAGAACGACGGGGAACAAAGATGTCTGAACTC GGAGCTGTGGCATGCATGCGCTGGGCCCCTTGTGTCTTTGCCAGTGGTCAGGAGCAGGGT CGTCTACTTTCCACAGGGCCATAGCGAGCAGGTTGCGGCATCAACTAATAAGGAAGTTGA TGCTCAAATCCCAAATTATCCAAACTTACCTCCTCAGTTAATCTGCCAGCTTCATAATGT CACCATGCATGCTGATGCAGAGACAGATGAAGTTTATGCTCAGATGACATTGCAACCATT GAGCCCGGAAGAGCAAAAGGAGCCTTTCCTTCCAATGGAGTTGGGTGCTGCTAGCAAGCA ACCCACTAATTACTTCTGCAAGACATTGACTGCAAGTGACACGAGCACTCATGGTGGTTT CTCTGTTCCCCGCCGGGCAGCTGAGAAAGTCTTCCCTCCACTAGATTTTTCACAGCAGCC TCCGGCACAGGAGCTGATTGCAAGAGATTTGCATGATAATGAATGGAAATTTCGCCATAT ATTTCGTGGTCAGCCTAAAAGGCATCTCCTGACAACAGGCTGGAGTGTGTTTGTGAGTGC GAAAAGACTAGTAGCAGGAGACTCTGTTATATTTATCTGGAATGATAACAATCAACTTCT TTTGGGAATACGTCGTGCAAATCGCCAACAGACTGTTATGCCCTCTTCCGTGTTGTCAAG CGATAGCATGCATATAGGTCTTCTTGCAGCAGCAGCTCATGCTGCAGCCACAAATAGTCG CTTCACTATTTTCTATAACCCCAGGGCTAGCCCTTCTGAATTTGTGATTCCATTGGCCAA GTATGTGAAAGCTGTTTACCACACACGTGTATCTGTTGGAATGCGTTTTAGAATGCTTTT CGAGACAGAGGAGTCAAGTGTCAGGCGATACATGGGTACAATCACCAGCATAAGTGATCT AGATTCAGTGCGCTGGCCAAACTCACACTGGCGTTCTGTTAAGGTTGGTTGGGATGAGTC CACCACTGGTGATAAACAGCCAAGGGTTTCTCTTTGGGAGATTGAGCCTTTGACAACCTT TCCGATGTACCCCAGTGCTTTTCCTTTAAGACTTAAGCGTCCGTGGGCTTCAGGACTGCC TATGCATGGCATGTTCAATGGTGGGGGAAATGACGATTTTGCACGCTATTCTTCTCTCAT GTGGCTTCGAGACGGAAATAGAGGAACCCAGTCCCTGAATTTTCAAGGACATGGAGTCTC ACCATGGCTTCAGCCAAGAATAGATTCTCCATTGCTGGGCCTTAAGCCAGACACGTACCA GCAAATGGCTGCAGCAGCACTGGAAGAAATTCGATATGGGGACCCTTCAAAGCAGCATCC AGCTACTCTGCAATACCAACAGACTCATAATCTGAACAGTGGATTAAATTCTCTGTTTGC AAGCCATGTTCTAGGGCAGGTGCAGTTTCAACCTCAGCAGTCACCCCTGCAAGTTGTTCA GCAAGGCCATTGTCAGAACACTGGTGACTCTGGGTTCCTTCAAGGTCAGCTTCCACGGCT GCAGTTGCATAACACTCAGCAGCTGCTAAAGGAGCAAGAGTTGCAGCAGCAGCAAAGACA GCATGTTTTACAAGAGCAATCTAGTCAAGAGATGCAACAGCAGCTCCCATCTAGTGATCA TCATGTTGCTGATGTAGCTTCTGAGTCTGGATCTGCTCCTCAGGCACAATCATCATTGCT TAGTGGATCATCATTCTACAATCAGAACCTCTTAGAAGGAAATAGTGATCCCCCTTTACA TCTACACAACAATTTCCACAACTTCTCTAACCAGGAAGCCTCAAACCTTCTTATTTTGCC TCGAAGTAGCCAATTAATGGCATCAGATGGGTGGCCTTCAAAGCGATTAACTTTAGAATC TGCTGTTCATCCTGAAGCTCCGTCCATGCACCCCAAGATTGAGAAAGTAAATCACCAGGG TATATCTCATTTTCCTGGCGCCTTTCCACCACAATCAGCAAGAGGCTGTTCCATCGTCCA GGATTGCAGGGCAGATGCTGAGAACCGCCTACTTTCATCATCATTTGAACTCCAGGATGG CATGACAAGCATCATAACTGATGCTAACAGAGAAACTGATACTATGGCCATACCTTTGTT GAGATATAGTGGTGCAGATTTGACAACTGAAAACACCTTAGCAACCTCCAATTGTTTAGG TGAATCTGGAACGTTCAATCCTCTTAATAACATATCTGTAAATCCATCACAAGGAGCAAC CTTTGTGAAGGTTTACAAATCAGGGTCCCTTGGGAGATCACTTGACATCTCCAGATTCAG CAGCTACTGCGAGTTACGTAGTGAGCTTGAGCGTCTCTTTGGTCTTGAAGGCCAACTGGA GGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTCGACCGGGAAAATGACATTCTTCT CGTCGGCGACGATCCATGGCAGGAGTTTGCAAATAGCGTATGGTGCATCAAAATACTCTC GCCACAGGAGGTGCAGCAGTTGGTTCGTGGTGGAGACGGCCTTCTGTCCTCACCTGGAGC AAGGATGCAGCAGAGCAATGCCTGCGACGACTATTCTGCAAGCCACAACATGCAGAATAT CGCCGGAAACATTGCATCTGTAGCGCCTCTGGACTACTGAGATGTAGACCAGAATCCAAA CTAAGCACCCTTAAGACTGCAGGGTCACCATTCGTGATCGCCTGCATTCCATGCGATCTT CACTAGTCCTGTCCGAATCAGTAGCAACTCAGTCAATAATATAGCTAGATGATCCGTTGT ATTCCATCTGATCATGGACATGCTGTATGATAGCTGCTTTAGCTCTATTAAATCTCTAAT GGCAGGCAACTAGGCAAGAACAGTTCTATGATGAATGATGGCAGTCGCTGTAGAATTGAC CTTATTCTGTAGCTATAATATGATGTCTAGAACTGATGATTCCAATTTCCAAATGGAGCC CGGAACATATTAAAATCAATCATTTGTCGCCTTCTTC