Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0610200-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:25768808:25773052:1 gene:Os12g0610200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIL11 description:Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008). (Os12t0610200-01)
Sequence	ATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTA GGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGC CAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATG GCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGAC CTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGC AGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCG CCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTGTGCGGCGTC TCGGAGGTCGTCATGGCGAAGATGGACGGGGCGGCGGCGGCGGAGACGGTCGGCGAGTCA TCGATGCTGACAATCGGGTCGAGCATCTGCGGGAGCAACCACGTCCAGACGCCGCCGGTG GGGAACGGGAAGGCCGGCGCCGGCACCGCCGGCGCCGCCAGAAGGGCGCACGACACGGCG ACGGTGGCGTCGTCGTCGATGAGGTCGAGGTCCTGCACCGCCAAGGCCGAGCCGCGCGAC GTCGCAGCCGCCGGCGTCGGCGGCAAGCGGAAGCAGCGCGGCGGCGCCGCCATGGAGTCC GGGAGCCCCAGCGAGGACGTGGAGTTCGAGTCCGCCGCCGCAACGTGCTCGCCGGCGCAG AAGACGACGACGGCGAAGCGGCGGCGCGCCGCCGAGGTGCACAACCTCTCCGAGAGGAGG AGAAGAGATAGGATCAATGAGAAGATGAAAGCATTACAGGAGCTCATACCTCACTGCAAC AAAACGGACAAAGCATCGATGCTGGATGAAGCGATCGAGTATCTCAAGTCACTGCAGCTC CAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCG GCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATG GCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCG CCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCA CCGCCTCCGATGCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAAC CTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGC GCAGCCGCTGACTCCTGA

Peptide Sequence

PEP ID	Os12t0610200-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:25768808:25773052:1 gene:Os12g0610200 transcript:Os12t0610200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIL11 description:Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008). (Os12t0610200-01)
Sequence	MNQFVPDWNTTSMGDGFAPLGEDDGLVELLWCNGHVVMQSQAPRKPPRPEKTTAAAAAAM AEDESASWFQYPVDDVLEKDLFTELFGEMTAAGGGGGDVRRAACKEERGAVAAFQSRMMP PPWPARGKAEFGDVDDVCGVSEVVMAKMDGAAAAETVGESSMLTIGSSICGSNHVQTPPV GNGKAGAGTAGAARRAHDTATVASSSMRSRSCTAKAEPRDVAAAGVGGKRKQRGGAAMES GSPSEDVEFESAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCN KTDKASMLDEAIEYLKSLQLQLQMMWMGGGMAPPAVMFPAAGVHQYMQRMGAVGMGPPHM ASLPRMPPFMAPPPAAVQSSPVVSMADPYARCLAVDHLQPPPPMHYLQGMSFYQLAAAKN LQQQQNTAEAPPPPPAGGNRAAADS

Transcript Sequence

Transcript ID	Os12t0610200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:25768808:25773052:1 gene:Os12g0610200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIL11 description:Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008). (Os12t0610200-01)
Sequence	GCTCTCCGGCGAGTCCTCTTCCTGCCCTGCCCTGCCCTGCCCTGCATTCTTTCTTTCTCC ACCAGGGGAATCCAGTTCACCCCCAGTGCTGCTTCTGCTGCTGCTTCTGCATCATCTTGC CCTGTTAAAAAGACACAGTGCCCTTGTTCTTTCGCAGTTGCAACTAGCATCTCCTCCTCT ACTTGTACTCACTTCACACCTCAGCTCAGCTCAGCTCATCTCCTGTCATCTCAGCTCAAA GAGAAAGAGCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACA GTTATCTGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGC TGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAA CACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCT GCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCC GGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTT TCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAAT GACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGG CGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGC GGAGTTCGGTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGA CGGGGCGGCGGCGGCGGAGACGGTCGGCGAGTCATCGATGCTGACAATCGGGTCGAGCAT CTGCGGGAGCAACCACGTCCAGACGCCGCCGGTGGGGAACGGGAAGGCCGGCGCCGGCAC CGCCGGCGCCGCCAGAAGGGCGCACGACACGGCGACGGTGGCGTCGTCGTCGATGAGGTC GAGGTCCTGCACCGCCAAGGCCGAGCCGCGCGACGTCGCAGCCGCCGGCGTCGGCGGCAA GCGGAAGCAGCGCGGCGGCGCCGCCATGGAGTCCGGGAGCCCCAGCGAGGACGTGGAGTT CGAGTCCGCCGCCGCAACGTGCTCGCCGGCGCAGAAGACGACGACGGCGAAGCGGCGGCG CGCCGCCGAGGTGCACAACCTCTCCGAGAGGAGGAGAAGAGATAGGATCAATGAGAAGAT GAAAGCATTACAGGAGCTCATACCTCACTGCAACAAAACGGACAAAGCATCGATGCTGGA TGAAGCGATCGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGG CGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCG GATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTT CATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTA CGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGATGCATTACCTGCAGGG GATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGA GGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTC TGCACAAAAAATACGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGC CGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCAT GATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTC GGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCT ATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGAT GTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTATT