Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0604600-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:25508619:25516929:1 gene:Os12g0604600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GTP-binding protein-like; root hair defective 3 protein-like. (Os12t0604600-01)
Sequence	ATGGACGAAGCGGCGGCGGCGGAGGCGGTGCAGCTGATCGACGGCGAGGGGGAGTTCGCG GCCGACTCCGCGGAGCGCTTCATGGCGGCCGCGGGCGTCGCCGGCTGCGGCCTCTCCTAC GCCGTCGTCTCCATCATGGGACCCCAGAGCAGCGGAAAGAGTACGTTGCTGAACCAACTC TTTGGAACTAATTTTAGGGAGATGGATGCGTTCAGGGGAAGGAGTCAAACTACCAAAGGT ATCTGGATAGCACGATGTGTTGGTGTTGAGCCGTGTACTGTTGTGATGGATTTGGAGGGT ACTGATGGAAGAGAAAGAGGAGAGGACGACACTGCATTTGAGAAGCAAAGTTCGTTGTTT GCTCTTGCAATTTCAGACATAGTTCTAATTAACATGTGGTGCCATGATATTGGCCGGGAA CAAGCTGCCAATAAGCCTCTTCTAAAAACAGTATTTCAGGTCATGATGCGTTTGTTCAGT CCCCGAAAGACAACACTATTATTTGTTATACGTGATAAAACCAGGACTCCACTTGAGCAT CTAGAACCAGTTCTGAGGGAGGATATTCAAAAGATATGGAACTCTGTTGCTAAGCCAGAG GCGCACAAAGACACCCCTATCAGTGAATTTTTCAATGTGCAAGTCACTGCATTGCCCAGT TTTGAAGAAAAAGAAGAACAATTCAGAGAGCAGGTTCAACAACTTAGGCAGAGATTTTCA AATTCAATTGCACCAGGAGGTCTTGCAGGTGATAGAAGAGGAGTGGTTCCTGCTTCAGGA TTTTTGTTTAGTTCACAACAGATTTGGAAAGTTATACGAGAGAATAAGGATCTTGACCTA CCTGCTCACAAGGTAATGGTTGCTACAGTTCGATGTGATGAAATTGCACACGAAAAGTTT TCCTGCCTAACCTCAGATGCAGAATGGATGGAATTGGAGAGTGATGTGCAGTCAGGTCCA GTACCTGGTTTTGGAAAAAAACTTGGCTATATTGTGGACGTCCACATGCAAGAGTATGAC AAAGAAGCCATCTATTTCGATGAAGCTGTTAGGACAGCAAAACGACAACTGCTGAAATCC AGAGTACTGAATCTTGTCCAACCCGCATTCCAGAAAATGTTGGCTCACCTGCGTACGAGG GCTCTTGAAAAATATAAAACTGAACTTAATCTTACTTTGGAGAGTGGAAAAGGTTTTGCA GCAGCTGTTCGAGACACTACTGAATCCAATCTCAACGAATTTGATCAAGGGTGTGCAGAT GCTGTAATCGAGCAGGCAGACTGGGACTACTCTAAAATACTAGAGAAGGTTCGGCGCGAT GTTGAAGACCACACACTTTCAATTCGTGAAGGCAAGCTATCAGAATTGACAAATCATGCT AAGGAGAAACTAAGAAAAGCACTAGTTGAACCTGTAGAGTCTCTTTTCGATGCTGCAGGC CCTTCAACCTGGGCATCAATAAGAAACCTTTTTAAACGAGAAACGGAGGCTATCCTGCCA GAGTTTCAGAAAAACCTTGCTGGGTTTGAAATGGAAAGTGCAACGTCAGAAGGAATGGTA TCAAAATTAAGGGATTATGCCAGAAGTATCGTAGAAAATAAAGCTAAAGAAGAAGCTGGC AAAGTTTTGATTCATATGAAGGAGAGGTTTACAACGGTTTTCAGTCATGACAAGGATTCA ATTCCGAGGGTCTGGACAGGGAAGGAAGATGTCCGTGCAATAGCAAAGGATGCTCGATCT GCTGCTCTCAAACTTCTTTCTGTATTGGCTGCCATTCGCTGGGATGAGAAACCGGATAAG ATCGAAAAAATCCTCACTTCCACACTCCTAGATGGTTCTGTTACACCGAAGTCGAAGGGT GCAAGTGCTTCTAGTGATCCACTTGCTTCAACTACTTGGGAAGAAGTTTCTCCAAAGTAT ACCCTCATCACTCCTTCTCAATGCAAGTCACTGTGGAAGCAGTTCAAAGCAGAAACTGAG TTCGCCATTACACAAGCGGTTTCCACGCAGCAAGCTCACAAGCGCGGCAATGGTAGGCTG CCTCCTCCTTGGGCCATGGTGGCAATTGCAGTTCTTGGGTTTAATGAGATCATGACGCTT CTTAGGAATCCCATATATCTATTCTTGCTATTTGTGGGTTATTTGCTGGTCAAAGCTTTA GCAGTGCAGCTAGATATCAACAGAGAATTCCAAAATGGCGTGGTTCCTGGGATCATCTCT GTTACAGCAAAACTAATCCCCACACTACAGAACATTCTAAACAAAGTTGCAACAGAGCAA CAACAACAGCAAGGGCATCACCAAGATGCTGCTGCAGAAGCTCCACAGCAACAGCAGCAA CCACAGCCGCAGCCACCTCCTCTACTCCTGAGCCCCAGAAGCCCAATGAGCGAACTGCGG AGGCCGCTGCACATGCCATTCAGCCCGGTGCGCAAGGCGGTATCGCCTTCGCCATCCTCA TCGTCTTCCACCGTTACATCGCCCAGGAACGCTGGTGAAGACCAGAAGCCCAGGCAAATG GTACAGCCTGACAACGAATCCAACAATGCTTACTCTATAGTTTGA

Peptide Sequence

PEP ID	Os12t0604600-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:25508619:25516929:1 gene:Os12g0604600 transcript:Os12t0604600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GTP-binding protein-like; root hair defective 3 protein-like. (Os12t0604600-01)
Sequence	MDEAAAAEAVQLIDGEGEFAADSAERFMAAAGVAGCGLSYAVVSIMGPQSSGKSTLLNQL FGTNFREMDAFRGRSQTTKGIWIARCVGVEPCTVVMDLEGTDGRERGEDDTAFEKQSSLF ALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLEH LEPVLREDIQKIWNSVAKPEAHKDTPISEFFNVQVTALPSFEEKEEQFREQVQQLRQRFS NSIAPGGLAGDRRGVVPASGFLFSSQQIWKVIRENKDLDLPAHKVMVATVRCDEIAHEKF SCLTSDAEWMELESDVQSGPVPGFGKKLGYIVDVHMQEYDKEAIYFDEAVRTAKRQLLKS RVLNLVQPAFQKMLAHLRTRALEKYKTELNLTLESGKGFAAAVRDTTESNLNEFDQGCAD AVIEQADWDYSKILEKVRRDVEDHTLSIREGKLSELTNHAKEKLRKALVEPVESLFDAAG PSTWASIRNLFKRETEAILPEFQKNLAGFEMESATSEGMVSKLRDYARSIVENKAKEEAG KVLIHMKERFTTVFSHDKDSIPRVWTGKEDVRAIAKDARSAALKLLSVLAAIRWDEKPDK IEKILTSTLLDGSVTPKSKGASASSDPLASTTWEEVSPKYTLITPSQCKSLWKQFKAETE FAITQAVSTQQAHKRGNGRLPPPWAMVAIAVLGFNEIMTLLRNPIYLFLLFVGYLLVKAL AVQLDINREFQNGVVPGIISVTAKLIPTLQNILNKVATEQQQQQGHHQDAAAEAPQQQQQ PQPQPPPLLLSPRSPMSELRRPLHMPFSPVRKAVSPSPSSSSSTVTSPRNAGEDQKPRQM VQPDNESNNAYSIV

Transcript Sequence

Transcript ID	Os12t0604600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:25508619:25516929:1 gene:Os12g0604600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GTP-binding protein-like; root hair defective 3 protein-like. (Os12t0604600-01)
Sequence	AGGGGGAGAGGCCTCGCGTCGCGTCTCCCACGTATCGTGGTCCGCGAAACCCGAGTGGCC GGAGAAGCCGAGGCGAGGCGAGGCGGTTGCCGTGGCGGGCGAGTGACATCGTCGTCGTCG TTGTCGTCGTCGTCGTCGTCGTCGCGCGCCCCACGAACCCTATCGGATCGGGATCGGGAT CGGAGAGGAGAGGAGAGGGTATGGACGAAGCGGCGGCGGCGGAGGCGGTGCAGCTGATCG ACGGCGAGGGGGAGTTCGCGGCCGACTCCGCGGAGCGCTTCATGGCGGCCGCGGGCGTCG CCGGCTGCGGCCTCTCCTACGCCGTCGTCTCCATCATGGGACCCCAGAGCAGCGGAAAGA GTACGTTGCTGAACCAACTCTTTGGAACTAATTTTAGGGAGATGGATGCGTTCAGGGGAA GGAGTCAAACTACCAAAGGTATCTGGATAGCACGATGTGTTGGTGTTGAGCCGTGTACTG TTGTGATGGATTTGGAGGGTACTGATGGAAGAGAAAGAGGAGAGGACGACACTGCATTTG AGAAGCAAAGTTCGTTGTTTGCTCTTGCAATTTCAGACATAGTTCTAATTAACATGTGGT GCCATGATATTGGCCGGGAACAAGCTGCCAATAAGCCTCTTCTAAAAACAGTATTTCAGG TCATGATGCGTTTGTTCAGTCCCCGAAAGACAACACTATTATTTGTTATACGTGATAAAA CCAGGACTCCACTTGAGCATCTAGAACCAGTTCTGAGGGAGGATATTCAAAAGATATGGA ACTCTGTTGCTAAGCCAGAGGCGCACAAAGACACCCCTATCAGTGAATTTTTCAATGTGC AAGTCACTGCATTGCCCAGTTTTGAAGAAAAAGAAGAACAATTCAGAGAGCAGGTTCAAC AACTTAGGCAGAGATTTTCAAATTCAATTGCACCAGGAGGTCTTGCAGGTGATAGAAGAG GAGTGGTTCCTGCTTCAGGATTTTTGTTTAGTTCACAACAGATTTGGAAAGTTATACGAG AGAATAAGGATCTTGACCTACCTGCTCACAAGGTAATGGTTGCTACAGTTCGATGTGATG AAATTGCACACGAAAAGTTTTCCTGCCTAACCTCAGATGCAGAATGGATGGAATTGGAGA GTGATGTGCAGTCAGGTCCAGTACCTGGTTTTGGAAAAAAACTTGGCTATATTGTGGACG TCCACATGCAAGAGTATGACAAAGAAGCCATCTATTTCGATGAAGCTGTTAGGACAGCAA AACGACAACTGCTGAAATCCAGAGTACTGAATCTTGTCCAACCCGCATTCCAGAAAATGT TGGCTCACCTGCGTACGAGGGCTCTTGAAAAATATAAAACTGAACTTAATCTTACTTTGG AGAGTGGAAAAGGTTTTGCAGCAGCTGTTCGAGACACTACTGAATCCAATCTCAACGAAT TTGATCAAGGGTGTGCAGATGCTGTAATCGAGCAGGCAGACTGGGACTACTCTAAAATAC TAGAGAAGGTTCGGCGCGATGTTGAAGACCACACACTTTCAATTCGTGAAGGCAAGCTAT CAGAATTGACAAATCATGCTAAGGAGAAACTAAGAAAAGCACTAGTTGAACCTGTAGAGT CTCTTTTCGATGCTGCAGGCCCTTCAACCTGGGCATCAATAAGAAACCTTTTTAAACGAG AAACGGAGGCTATCCTGCCAGAGTTTCAGAAAAACCTTGCTGGGTTTGAAATGGAAAGTG CAACGTCAGAAGGAATGGTATCAAAATTAAGGGATTATGCCAGAAGTATCGTAGAAAATA AAGCTAAAGAAGAAGCTGGCAAAGTTTTGATTCATATGAAGGAGAGGTTTACAACGGTTT TCAGTCATGACAAGGATTCAATTCCGAGGGTCTGGACAGGGAAGGAAGATGTCCGTGCAA TAGCAAAGGATGCTCGATCTGCTGCTCTCAAACTTCTTTCTGTATTGGCTGCCATTCGCT GGGATGAGAAACCGGATAAGATCGAAAAAATCCTCACTTCCACACTCCTAGATGGTTCTG TTACACCGAAGTCGAAGGGTGCAAGTGCTTCTAGTGATCCACTTGCTTCAACTACTTGGG AAGAAGTTTCTCCAAAGTATACCCTCATCACTCCTTCTCAATGCAAGTCACTGTGGAAGC AGTTCAAAGCAGAAACTGAGTTCGCCATTACACAAGCGGTTTCCACGCAGCAAGCTCACA AGCGCGGCAATGGTAGGCTGCCTCCTCCTTGGGCCATGGTGGCAATTGCAGTTCTTGGGT TTAATGAGATCATGACGCTTCTTAGGAATCCCATATATCTATTCTTGCTATTTGTGGGTT ATTTGCTGGTCAAAGCTTTAGCAGTGCAGCTAGATATCAACAGAGAATTCCAAAATGGCG TGGTTCCTGGGATCATCTCTGTTACAGCAAAACTAATCCCCACACTACAGAACATTCTAA ACAAAGTTGCAACAGAGCAACAACAACAGCAAGGGCATCACCAAGATGCTGCTGCAGAAG CTCCACAGCAACAGCAGCAACCACAGCCGCAGCCACCTCCTCTACTCCTGAGCCCCAGAA GCCCAATGAGCGAACTGCGGAGGCCGCTGCACATGCCATTCAGCCCGGTGCGCAAGGCGG TATCGCCTTCGCCATCCTCATCGTCTTCCACCGTTACATCGCCCAGGAACGCTGGTGAAG ACCAGAAGCCCAGGCAAATGGTACAGCCTGACAACGAATCCAACAATGCTTACTCTATAG TTTGATGATCTTGGGTGTTCAGGGTCAGCTGGTGGTTTATACTGTCCAACTGGAAATTGG AAGGTATGAGCATTTCGTTGTCCTCATTTGAATGCATAGGTACACTGATTGCAGCAATGA TCCATCGTCAGTAGGGTATCAAGACAGAATAATTCAAAATATTTTGTCTCGCAAAATTTT GTAAGGAGGGTGGTTAATCTGTAGAATGGACAGAACAATTGCTACTGAACACCATTTATC AGCATGTATATAGGAAAGATTCAACTGCAATGCCTAGGATATGGTCAATCAAAAAGAAAA AAAATATATATATACTTCTAATGCC