Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0603800-00
CDS Infomation

cds chromosome:IRGSP-1.0:12:25462616:25463501:1 gene:Os12g0603800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALMODULIN-LIKE PROTEIN 5 description:Similar to Calmodulin NtCaM13. (Os12t0603800-00)
Sequence

ATGGCGGAGGTGGAGGTGAGGGTGAGGCAGGAGCAGGTGGCGGAGTTCAGGGAGACGTTC
GCGTTCTTCGACAAGGACGGGGACGGGTGCATCACGCTGGAGGAGCTGGACACGGTGGTG
CGGTCGCTGGGGCAGACGCCGACGAGGGAGGAGCTCGCCGAGATGATCCGCGACGTCGAC
GTCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTCGCCCTCATGGCCCGCAAGGCC
TCGCGCGGCGGCGAGAACGGCGGAGGAGGAGACGACTCCGGCGACGCCGCCGACGAGGAG
CTCCGGGAGGCGTTCAAGGTGTTCGACAAGGACCAGGACGGGCTCATCTCCGCCGCCGAG
CTCCGCCACGTGATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTGGAGCAGATG
ATCCGGGAGGCCGACCTCGACGGCGACGGCCAGGTCAACTTCGACGAGTTCGTCAGGATG
ATGATGCTCTCCGACCAATAA

Peptide Sequence

PEP ID

Os12t0603800-00
PEP Infomation

pep chromosome:IRGSP-1.0:12:25462616:25463501:1 gene:Os12g0603800 transcript:Os12t0603800-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALMODULIN-LIKE PROTEIN 5 description:Similar to Calmodulin NtCaM13. (Os12t0603800-00)
Sequence

MAEVEVRVRQEQVAEFRETFAFFDKDGDGCITLEELDTVVRSLGQTPTREELAEMIRDVD
VDGNGTIEFAEFLALMARKASRGGENGGGGDDSGDAADEELREAFKVFDKDQDGLISAAE
LRHVMISLGEKLTDEEVEQMIREADLDGDGQVNFDEFVRMMMLSDQ

Transcript Sequence

Transcript ID

Os12t0603800-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:25462616:25463501:1 gene:Os12g0603800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALMODULIN-LIKE PROTEIN 5 description:Similar to Calmodulin NtCaM13. (Os12t0603800-00)
Sequence

GCTTCATTCCAAGCCACTACACTAGCACACACTACATACAATCTTCTTCTTCTTCTTCTT
CTTGAGTTCTTGGAGGTCGAGGGGTGGGTCATCAATGGCGGAGGTGGAGGTGAGGGTGAG
GCAGGAGCAGGTGGCGGAGTTCAGGGAGACGTTCGCGTTCTTCGACAAGGACGGGGACGG
GTGCATCACGCTGGAGGAGCTGGACACGGTGGTGCGGTCGCTGGGGCAGACGCCGACGAG
GGAGGAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAACGGCACCATCGAGTT
CGCCGAGTTCCTCGCCCTCATGGCCCGCAAGGCCTCGCGCGGCGGCGAGAACGGCGGAGG
AGGAGACGACTCCGGCGACGCCGCCGACGAGGAGCTCCGGGAGGCGTTCAAGGTGTTCGA
CAAGGACCAGGACGGGCTCATCTCCGCCGCCGAGCTCCGCCACGTGATGATCAGCCTCGG
CGAGAAGCTCACCGACGAGGAGGTGGAGCAGATGATCCGGGAGGCCGACCTCGACGGCGA
CGGCCAGGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACCAATAATTAAT
CTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTT
CGATCTCTTCTTTCTTTCTTTCTTCCCAATTTGATTAGTTACCTAACTAATTAAGGTAGC
TAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATT
TGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAA
GTATATACATATATCTCCAAATATATGTCAATAATTTTTTTGTTGC