Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0599900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:25236012:25240695:1 gene:Os12g0599900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os12t0599900-01)
Sequence

ATGGCCTCCTCCCCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTC
CTGTGTGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAAT
GCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAA
TCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCA
TGTGACGGGGACATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATA
CCTAACGCGGGGGGCTTCATGCCGCTGCACTACGCAGCAGAGTACGGGCATGTTGATGTT
GTGAGACTATTGCTGTCCAAAGGAGTTCATGTGGATCCTCTGAATTATAGTGGGGCCCCG
CTGCACTTGGCTACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGT
GCTGATCCCAACAGAGTTGTCAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGC
CACTCCTTGAAATGCATGAAGTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGT
TCTACTGGACCAAGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATT
GTCAAAATCTTGCTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAGGATGGGAGGATT
CCTATCATGATGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGG
ACAAAACCAATTCCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGA
TTCACACGTACCGAACCTGAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAG
TTAAATGCCAAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACC
AAGGCACTGGAAAAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGG
CTGCGGCTGCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGC
CCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTAC
AGAGAAGCGGCGGCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATC
AAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGAT
AAGAACCCTTGA

Peptide Sequence

PEP ID

Os12t0599900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:25236012:25240695:1 gene:Os12g0599900 transcript:Os12t0599900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os12t0599900-01)
Sequence

MASSPSAVVLQAALDGDLHLLCEMAKKLDLRGFKDMNGRNALHLAASYGHLEICKFLVEE
SGLDVNSGSHRGETPILLAACDGDINVLIYLLDHGGDPAIPNAGGFMPLHYAAEYGHVDV
VRLLLSKGVHVDPLNYSGAPLHLATANDHDQVAKVLLEHGADPNRVVNHVLSPLVVACCS
HSLKCMKLLIKAGADVNDRSSTGPRTTPLVLAVDDGSADIVKILLEAGADPNIRNEDGRI
PIMMAAARGQRELVEILFPRTKPIPCLPDWSVDGIIRTMRFTRTEPEDAVPVEILVSDSK
LNAKEAFAEGEYITAIYFYTKALEKAPLDATLFANRSLCWLRLREGDVALLDARRCKALR
PGWSKAWYREGAALSLLKNYREAAAAFTEALKLDPENYEIKIALREALECRKRAARSEED
KNP

Transcript Sequence

Transcript ID

Os12t0599900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:25236012:25240695:1 gene:Os12g0599900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os12t0599900-01)
Sequence

ATTCCTCTTCGTCTCCAAACCCTTCCCAAAACCCTACTCCGCGCACGCGCCTCTCCTTCT
AGAACCTTCTGGAACCCTCGCCCCCGCGAAGGCGGCGCCGCCGCCGAGATGGCCTCCTCC
CCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATG
GCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTG
GCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGAT
GTCAACTCAGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGAC
ATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACCTAACGCGGGG
GGCTTCATGCCGCTGCACTACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTG
CTGTCCAAAGGAGTTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCT
ACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCCCAAC
AGAGTTGTCAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGCCACTCCTTGAAA
TGCATGAAGTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCA
AGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTG
CTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAGGATGGGAGGATTCCTATCATGATG
GCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATT
CCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGATTCACACGTACC
GAACCTGAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAGTTAAATGCCAAG
GAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACCAAGGCACTGGAA
AAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGGCTGCGA
GAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGTTGGTCC
AAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGAGAAGCGGCG
GCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTA
AGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGA
GCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACA
TCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATCTA
AACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAAC
TAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTT
TCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTGTCTTCCCTTTGT
GTGCGACTCTAATGCAAGCGCAGACTGGCAGCATGATATTTGTATATGATATATGTGAAG
TCCGGCAGTTTCAGTATTC