Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0596900-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:25057086:25060655:1 gene:Os12g0596900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycosylphosphatidylinositol-mannosyltransferase I, PIG-X/PBN1 domain containing protein. (Os12t0596900-01)
Sequence

ATGGCCGCGGCGAGCGGACCGTGGCTGCTCGTCGTGGTCGTGGCTTGGGTCTTGGGCGTT
GCGGCCGCCTCGTCGTCGTCGTCATCGCCTGGGCAGGCAGGTACCAGCCAGAAATTCAAC
AAGTGTATGCCGTGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTTGATCGGC
CAGCTTGCTCAACATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGA
CTTGATTATGATCTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAA
GGTTCTCATCGCCGTCTAGTCTATCATGTGGAATTTGCTAACTGTGCAGATGCTATGGTT
AATTTCCTTGATAACTATGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTG
TTTGCTGACCCATTTGAGCTACAACATTTTGTTGAGCGGAAAGTATATCTTGATATGGTT
GTTTTCGGAGACACCAACCTTGAACTGCCTTCGGCTCTATCCAACCGGTCATCTGTGGAA
ATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCT
CTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGC
CCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTG
CTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGAC
GAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATT
TTAATAGTCATAGCTGCCCTATTTTATTGA

Peptide Sequence

PEP ID

Os12t0596900-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:25057086:25060655:1 gene:Os12g0596900 transcript:Os12t0596900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycosylphosphatidylinositol-mannosyltransferase I, PIG-X/PBN1 domain containing protein. (Os12t0596900-01)
Sequence

MAAASGPWLLVVVVAWVLGVAAASSSSSSPGQAGTSQKFNKCMPCSRRYVADSYLDTLIG
QLAQHRDLTETSDSADSCKGLDYDLDAPMLTELHSELVGEGSHRRLVYHVEFANCADAMV
NFLDNYDANLVVIENLPNGVFADPFELQHFVERKVYLDMVVFGDTNLELPSALSNRSSVE
IHVDLAPLASMNCNLVIDLPLHARYPPLDASGYATVEFGSPDLLLRYRKKDTVPESCSWL
LKDLDAAPVEKATWRIPCGDEAHIGFVSSITFLSALVCSILIVIAALFY

Transcript Sequence

Transcript ID

Os12t0596900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:25057086:25060655:1 gene:Os12g0596900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycosylphosphatidylinositol-mannosyltransferase I, PIG-X/PBN1 domain containing protein. (Os12t0596900-01)
Sequence

ATCTGTGACCCACTCCGTCGTCTTCCCCGGAAACGGTCACGCGACTCGCGAGCTCCCGCC
GCCGCCGCCGCCGTCGCCGTCGCCGTCGCGGCCTCCCACCTCTCCCTCTACCCCACCACA
CTCGCCGCCGGCGAGGCCCTGACGGCGATCCCCAACACTGCCCCCCGGCGGCTGCCGTTG
GATCGTGGGAGGGAGGATTGGCCGGTTGTACTACAGTTGAGGGAGGGAGGAGCTACCGTT
TGTGATCCGCCGCCTGCGACCGGGCGTCCCCGTAGTTAGATCCGGCTCGACCACCACGGC
CTCCGGCGCTCTGAGCGGCTGCTCTGTGTGAGAGGCCCTGCTGCTGAAAGAGAATCCATG
GCCGCGGCGAGCGGACCGTGGCTGCTCGTCGTGGTCGTGGCTTGGGTCTTGGGCGTTGCG
GCCGCCTCGTCGTCGTCGTCATCGCCTGGGCAGGCAGGTACCAGCCAGAAATTCAACAAG
TGTATGCCGTGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTTGATCGGCCAG
CTTGCTCAACATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTT
GATTATGATCTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGT
TCTCATCGCCGTCTAGTCTATCATGTGGAATTTGCTAACTGTGCAGATGCTATGGTTAAT
TTCCTTGATAACTATGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTT
GCTGACCCATTTGAGCTACAACATTTTGTTGAGCGGAAAGTATATCTTGATATGGTTGTT
TTCGGAGACACCAACCTTGAACTGCCTTCGGCTCTATCCAACCGGTCATCTGTGGAAATC
CATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTC
CATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCA
GATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTT
AAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAA
GCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTA
ATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTA
TTTCGTCC