Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0589000-00
CDS Infomation	cds chromosome:IRGSP-1.0:12:24632487:24633776:-1 gene:Os12g0589000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 130, ROOT HAIR DEFECTIVE-SIX LIKE 9 description:Similar to Helix-loop-helix DNA-binding domain containing protein. (Os12t0589000-00)
Sequence	ATGGAGGGTGGAGGACTGATCGCCGATATGAGCTGGACCGTCTTCGACTTGCCATCGCAC AGCGATGAGTCGGAGATGATGGCGCAGCTCTTCAGTGCATTCCCCATCCATGGTGAGGAG GAAGGCCATGAGCAGCTCCCATGGTTTGATCAATCTTCCAATCCATGCTACTATAGCTGC AATGCTAGCAGCACTGCATACAGCAACAGCAATGCTAGTAGCATTCCTGCTCCATCTGAG TATGAAGGATACTGCTTCAGTGACTCAAATGAGGCCCTGGGTGTCAGCTCCAGCATTGCA CCACATGACCTGAGCATGGTCCAGGTGCAAGGTGCAACTGAGTTTCTGAATGTGATCCCA AACCATTCCCTTGATTCATTCGGTAATGGCGAGCTGGGCCACGAGGATCTTGATTCGGTT AGTGGGACTAACAAGAGAAAACAGTCGGCAGAAGGAGAATTTGATGGCCAAACAAGAGGT TCAAAATGCGCGAGAAAGGCTGAACCGAAGCGAGCGAAGAAGGCCAAGCAAACTGTGGAG AAGGATGCAAGTGTTGCCATCCCAAATGGGAGCTGTTCCATTTCTGACAATGATTCCAGT TCATCCCAGGAGGTTGCAGATGCTGGTGCTACTTCGAAAGGCAAATCCCGGGCTGGCCGC GGAGCAGCCACTGATCCCCAGAGCCTCTATGCAAGGAAAAGGAGAGAGAGGATCAATGAG AGGCTCAAGACACTTCAGAACCTTGTGCCCAATGGCACCAAAGTTGATATCAGCACCATG CTTGAGGAGGCAGTCCACTATGTGAAGTTCCTGCAGCTTCAGATCAAGCTCCTCAGCTCC GATGAAATGTGGATGTATGCGCCAATTGCGTACAACGGGATGAACATTGGGCTCGATCTG AACATTGATACATGA

Peptide Sequence

PEP ID	Os12t0589000-00
PEP Infomation	pep chromosome:IRGSP-1.0:12:24632487:24633776:-1 gene:Os12g0589000 transcript:Os12t0589000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 130, ROOT HAIR DEFECTIVE-SIX LIKE 9 description:Similar to Helix-loop-helix DNA-binding domain containing protein. (Os12t0589000-00)
Sequence	MEGGGLIADMSWTVFDLPSHSDESEMMAQLFSAFPIHGEEEGHEQLPWFDQSSNPCYYSC NASSTAYSNSNASSIPAPSEYEGYCFSDSNEALGVSSSIAPHDLSMVQVQGATEFLNVIP NHSLDSFGNGELGHEDLDSVSGTNKRKQSAEGEFDGQTRGSKCARKAEPKRAKKAKQTVE KDASVAIPNGSCSISDNDSSSSQEVADAGATSKGKSRAGRGAATDPQSLYARKRRERINE RLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMYAPIAYNGMNIGLDL NIDT

Transcript Sequence

Transcript ID	Os12t0589000-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:24632487:24633776:-1 gene:Os12g0589000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 130, ROOT HAIR DEFECTIVE-SIX LIKE 9 description:Similar to Helix-loop-helix DNA-binding domain containing protein. (Os12t0589000-00)
Sequence	ATGGAGGGTGGAGGACTGATCGCCGATATGAGCTGGACCGTCTTCGACTTGCCATCGCAC AGCGATGAGTCGGAGATGATGGCGCAGCTCTTCAGTGCATTCCCCATCCATGGTGAGGAG GAAGGCCATGAGCAGCTCCCATGGTTTGATCAATCTTCCAATCCATGCTACTATAGCTGC AATGCTAGCAGCACTGCATACAGCAACAGCAATGCTAGTAGCATTCCTGCTCCATCTGAG TATGAAGGATACTGCTTCAGTGACTCAAATGAGGCCCTGGGTGTCAGCTCCAGCATTGCA CCACATGACCTGAGCATGGTCCAGGTGCAAGGTGCAACTGAGTTTCTGAATGTGATCCCA AACCATTCCCTTGATTCATTCGGTAATGGCGAGCTGGGCCACGAGGATCTTGATTCGGTT AGTGGGACTAACAAGAGAAAACAGTCGGCAGAAGGAGAATTTGATGGCCAAACAAGAGGT TCAAAATGCGCGAGAAAGGCTGAACCGAAGCGAGCGAAGAAGGCCAAGCAAACTGTGGAG AAGGATGCAAGTGTTGCCATCCCAAATGGGAGCTGTTCCATTTCTGACAATGATTCCAGT TCATCCCAGGAGGTTGCAGATGCTGGTGCTACTTCGAAAGGCAAATCCCGGGCTGGCCGC GGAGCAGCCACTGATCCCCAGAGCCTCTATGCAAGGAAAAGGAGAGAGAGGATCAATGAG AGGCTCAAGACACTTCAGAACCTTGTGCCCAATGGCACCAAAGTTGATATCAGCACCATG CTTGAGGAGGCAGTCCACTATGTGAAGTTCCTGCAGCTTCAGATCAAGCTCCTCAGCTCC GATGAAATGTGGATGTATGCGCCAATTGCGTACAACGGGATGAACATTGGGCTCGATCTG AACATTGATACATGA