Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0588900-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:24627878:24630949:-1 gene:Os12g0588900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rossmann-like alpha/beta/alpha sandwich fold domain containing protein. (Os12t0588900-01);Similar to Cytoplasmic tRNA 2-thiolation protein 2. (Os12t0588900-02)
Sequence	GCGCTCGCGTGCTTACCCGCCTCGCGTACCCACACCATGGCCGCCGCCGCCGCCTCCTCC TGCGGCGGCGCCGGCTGCGGGCCCCACTGCTCCTCCTCCGCCTCCGCCGCCGCGGTGGAG GATGCTGCTGCTGCGGCGGCGGAGAAGGTAGGCCGCCTGTCACTCTCCCGCGAGTGCGGC AAGTGCGGCGGCGGCGCCGCTGCCGTCGCCGTCGCCGGAGGCCTCGGCCTGTGCGGCGAG TGCTTCCGGGCCAACCTGCTCGGGAAGTTCAAGCTCGCCGTCACGAGCAACGCCATGGTT CGCCCCACCGACTCCGTCCTCCTCGCCTTCTCCGGCGGCCCCGCCTCCAGGGTAGCGCTG CAATTCATACATGAGATGCGGTGCAAGGCGATTGAGAGCTGGGACGTGAGCAATTCACAA GCCTTACCGGTATTCGGTGTCGGGGTGGCATTCGTGGATGAAAGTGTTCTCTGTTCGAAG CCGAGAGACGAGATTGAGATGGCAATTGAAGATATCAGGTCGATCGTGTCGAGTTTGTCA ACAGGCGTTAAAGCGATGCACATTGCGCGTCTTGAGGATGTGTTCTCCACCGAATCGGAG GATGGGGAACGCAGGTTGAGGGAGGCGGTGGATATGATTGGTGATGACACTGGGAGGGAG GATTTCCTTCGGTGCTTACGCATGCTTTCGTTGCAAAAGATTGCTATGGAAAACGGGTAC GCTAAGATCATGCTAGGATCATGTGCTTCTGCAATAGCATGCCATGTTCTGTCCGCGACT GTGAAGGGGCAAGGTTACTCTTTACCTGCTGATGTCCAGTATGTTGATACACGGTGGGAA ATACCTGTTGTTCTCCCACTCCGTGATTGCCTAGCCCAAGAGCTTACTCTCCTCTGTGAA CTAGATAGTTTAAAAACACAGCAACATCTCGATAGGCCTTCGAACGGCATCAACAGTTTA GTTGCATCCTTTATTAAACGACTACGGGAAGAGAACCCTTCTCGAGAGCATACCATTGTA AGAACTGCGCAAAAGCTCAAGCCCTTCTCTTTTAACAAATTCTCGGCAGATGGCTATCAT GATTTCCTACCATCGCGACTACGTCCAAAATTCCAGAAGTTTGATAGCGATGAGTCCACT TTTTCTGAGATTCTCTGTCTGATGTGTGGAAGTCCGTTCAGTGAATCAGAACTCCAGAAT TTGGAAAGCACAAAACACAAGGCTCAGAAGAAAATTGATCTTTATACTGCTCATTGTTGT CAAAGCTGTTATTTCCAGATTCTACCAGCCGGTGAAAACTTGAATGAACATTTCTTTTCA CTACTACCAAAATTATGGACTGGAAAAATGGATACCATATCTGACAGCCATAGCTTGCTA AGAGATCAAATAGAAGAGTACCTGCTTGAAGAAAATGATGATGGAAACTGA

Peptide Sequence

PEP ID	Os12t0588900-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:24627878:24630949:-1 gene:Os12g0588900 transcript:Os12t0588900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rossmann-like alpha/beta/alpha sandwich fold domain containing protein. (Os12t0588900-01);Similar to Cytoplasmic tRNA 2-thiolation protein 2. (Os12t0588900-02)
Sequence	ALACLPASRTHTMAAAAASSCGGAGCGPHCSSSASAAAVEDAAAAAAEKVGRLSLSRECG KCGGGAAAVAVAGGLGLCGECFRANLLGKFKLAVTSNAMVRPTDSVLLAFSGGPASRVAL QFIHEMRCKAIESWDVSNSQALPVFGVGVAFVDESVLCSKPRDEIEMAIEDIRSIVSSLS TGVKAMHIARLEDVFSTESEDGERRLREAVDMIGDDTGREDFLRCLRMLSLQKIAMENGY AKIMLGSCASAIACHVLSATVKGQGYSLPADVQYVDTRWEIPVVLPLRDCLAQELTLLCE LDSLKTQQHLDRPSNGINSLVASFIKRLREENPSREHTIVRTAQKLKPFSFNKFSADGYH DFLPSRLRPKFQKFDSDESTFSEILCLMCGSPFSESELQNLESTKHKAQKKIDLYTAHCC QSCYFQILPAGENLNEHFFSLLPKLWTGKMDTISDSHSLLRDQIEEYLLEENDDGN

Transcript Sequence

Transcript ID	Os12t0588900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:24627878:24630949:-1 gene:Os12g0588900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rossmann-like alpha/beta/alpha sandwich fold domain containing protein. (Os12t0588900-01);Similar to Cytoplasmic tRNA 2-thiolation protein 2. (Os12t0588900-02)
Sequence	GCGCTCGCGTGCTTACCCGCCTCGCGTACCCACACCATGGCCGCCGCCGCCGCCTCCTCC TGCGGCGGCGCCGGCTGCGGGCCCCACTGCTCCTCCTCCGCCTCCGCCGCCGCGGTGGAG GATGCTGCTGCTGCGGCGGCGGAGAAGGTAGGCCGCCTGTCACTCTCCCGCGAGTGCGGC AAGTGCGGCGGCGGCGCCGCTGCCGTCGCCGTCGCCGGAGGCCTCGGCCTGTGCGGCGAG TGCTTCCGGGCCAACCTGCTCGGGAAGTTCAAGCTCGCCGTCACGAGCAACGCCATGGTT CGCCCCACCGACTCCGTCCTCCTCGCCTTCTCCGGCGGCCCCGCCTCCAGGGTAGCGCTG CAATTCATACATGAGATGCGGTGCAAGGCGATTGAGAGCTGGGACGTGAGCAATTCACAA GCCTTACCGGTATTCGGTGTCGGGGTGGCATTCGTGGATGAAAGTGTTCTCTGTTCGAAG CCGAGAGACGAGATTGAGATGGCAATTGAAGATATCAGGTCGATCGTGTCGAGTTTGTCA ACAGGCGTTAAAGCGATGCACATTGCGCGTCTTGAGGATGTGTTCTCCACCGAATCGGAG GATGGGGAACGCAGGTTGAGGGAGGCGGTGGATATGATTGGTGATGACACTGGGAGGGAG GATTTCCTTCGGTGCTTACGCATGCTTTCGTTGCAAAAGATTGCTATGGAAAACGGGTAC GCTAAGATCATGCTAGGATCATGTGCTTCTGCAATAGCATGCCATGTTCTGTCCGCGACT GTGAAGGGGCAAGGTTACTCTTTACCTGCTGATGTCCAGTATGTTGATACACGGTGGGAA ATACCTGTTGTTCTCCCACTCCGTGATTGCCTAGCCCAAGAGCTTACTCTCCTCTGTGAA CTAGATAGTTTAAAAACACAGCAACATCTCGATAGGCCTTCGAACGGCATCAACAGTTTA GTTGCATCCTTTATTAAACGACTACGGGAAGAGAACCCTTCTCGAGAGCATACCATTGTA AGAACTGCGCAAAAGCTCAAGCCCTTCTCTTTTAACAAATTCTCGGCAGATGGCTATCAT GATTTCCTACCATCGCGACTACGTCCAAAATTCCAGAAGTTTGATAGCGATGAGTCCACT TTTTCTGAGATTCTCTGTCTGATGTGTGGAAGTCCGTTCAGTGAATCAGAACTCCAGAAT TTGGAAAGCACAAAACACAAGGCTCAGAAGAAAATTGATCTTTATACTGCTCATTGTTGT CAAAGCTGTTATTTCCAGATTCTACCAGCCGGTGAAAACTTGAATGAACATTTCTTTTCA CTACTACCAAAATTATGGACTGGAAAAATGGATACCATATCTGACAGCCATAGCTTGCTA AGAGATCAAATAGAAGAGTACCTGCTTGAAGAAAATGATGATGGAAACTGAACTTGATAT TTCAGTGAAGCCCGAATATATTTGCCAGAAAGACAGCAGAGATTCCTGCCTAGTTGGGCT CCTCACATTGGCATAATCACATAATCCAAACTTGCTTCAGATAATAGTGTTTCTATCTAG CATGGCATTGGTTTATTCAGAATTCTGCCAGATACTTACAATTTCAACACATTATATCCT TGACTCAATTCCTGATGTTTCTGTATGTCCTTCCTACTCTTAAGAGTTGAAACCTGTATG AAATCCGTATAGTGATAGCCTGATGGGGCAGACCGTCACTTGCCAGCAAGTTTCCACCGA TCTCAAGACCACAGACATTGGACAGAAACTTCCATGTGATTACAGTATTCTGATTGGTCA CATCTCCTGTACCAACTATTCTGTCTGCAAAAGATTGTAACCTGAAGAATTTATTCGATT ATTTTGGAACAATCTTCTCTATACAAGATTTGCACATACTATGGTTTCAATCAAG