Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0583300-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:24212538:24214065:1 gene:Os12g0583300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase aspartic, catalytic domain containing protein. (Os12t0583300-01)
Sequence

ATGGCGCGAAAGCTGTTCGTTCTCGTGCTCATCATGTGTTCGACCACCGCCCTAATTACT
TGCACCAATGGCGGCGCCGGCGACGGAGGCGAAGGGCTCCACATGAAGCTCACCCACGTC
GACGCCAAGGGTAACTACACCGCGGAGGAGCTCGTGCGGCGCGCCGTCGCCGCCGGCAAG
CAGCGGCTGGCCTTCCTGGACGCCGCGATGGCCGGCGGCGGCGACGGCGGCGGCGTGGGC
GCGCCCGTCCGCTGGGCGACGCTGCAGTACGTCGCCGAGTACCTCATCGGCGACCCGCCG
CAGCGCGCGGAGGCGCTCATCGACACCGGCAGCGACCTCGTCTGGACGCAGTGCTCCACC
TGCCTCCGCAAGGTGTGTGCCAGGCAGGCGCTGCCGTACTACAACTCGTCGGCGTCGAGC
ACCTTCGCGCCGGTGCCGTGCGCGGCGAGGATCTGCGCCGCCAACGACGACATCATCCAC
TTCTGCGATCTCGCCGCCGGCTGCTCGGTCATCGCCGGCTACGGCGCCGGCGTCGTCGCC
GGCACGCTCGGCACCGAGGCGTTCGCGTTCCAGTCGGGAACGGCGGAGCTCGCCTTCGGG
TGCGTGACCTTCACGCGGATCGTCCAGGGCGCGCTCCATGGCGCCTCCGGCCTCATCGGC
CTCGGCCGCGGCCGCCTCTCGCTGGTGTCGCAGACCGGCGCCACCAAGTTCTCCTACTGC
CTCACCCCTTACTTCCACAACAACGGAGCCACCGGCCACCTGTTCGTCGGCGCGTCGGCG
AGCTTGGGCGGCCATGGCGACGTGATGACCACGCAGTTCGTGAAGGGCCCCAAGGGCTCC
CCGTTCTACTACCTCCCCCTCATCGGCCTCACCGTCGGGGAGACGAGGCTGCCGATCCCG
GCCACGGTGTTCGACCTCCGGGAGGTCGCCCCGGGGCTCTTCTCCGGCGGCGTCATCATC
GACTCCGGCTCGCCGTTCACGTCGCTCGTCCACGACGCGTACGACGCGCTGGCGTCCGAG
CTGGCGGCGCGGCTGAACGGCAGCCTCGTGGCGCCGCCGCCGGACGCCGACGATGGCGCG
CTGTGCGTGGCGCGGCGCGACGTGGGCAGGGTGGTGCCGGCGGTGGTGTTCCACTTCCGC
GGCGGCGCGGACATGGCGGTGCCGGCGGAGAGCTACTGGGCGCCGGTGGACAAGGCGGCG
GCGTGCATGGCGATCGCCAGCGCGGGGCCGTACCGGAGGCAGAGCGTGATCGGCAACTAC
CAGCAGCAGAACATGCGCGTGCTCTACGACCTCGCCAATGGCGACTTCTCCTTCCAGCCT
GCCGACTGCAGCGCGCTCTGA

Peptide Sequence

PEP ID

Os12t0583300-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:24212538:24214065:1 gene:Os12g0583300 transcript:Os12t0583300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase aspartic, catalytic domain containing protein. (Os12t0583300-01)
Sequence

MARKLFVLVLIMCSTTALITCTNGGAGDGGEGLHMKLTHVDAKGNYTAEELVRRAVAAGK
QRLAFLDAAMAGGGDGGGVGAPVRWATLQYVAEYLIGDPPQRAEALIDTGSDLVWTQCST
CLRKVCARQALPYYNSSASSTFAPVPCAARICAANDDIIHFCDLAAGCSVIAGYGAGVVA
GTLGTEAFAFQSGTAELAFGCVTFTRIVQGALHGASGLIGLGRGRLSLVSQTGATKFSYC
LTPYFHNNGATGHLFVGASASLGGHGDVMTTQFVKGPKGSPFYYLPLIGLTVGETRLPIP
ATVFDLREVAPGLFSGGVIIDSGSPFTSLVHDAYDALASELAARLNGSLVAPPPDADDGA
LCVARRDVGRVVPAVVFHFRGGADMAVPAESYWAPVDKAAACMAIASAGPYRRQSVIGNY
QQQNMRVLYDLANGDFSFQPADCSAL

Transcript Sequence

Transcript ID

Os12t0583300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:24212538:24214065:1 gene:Os12g0583300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase aspartic, catalytic domain containing protein. (Os12t0583300-01)
Sequence

GCATAAAACATAAACGTTTAATTATTCAAGTTCGCTCAACAAGGCGCGAAAAAATGGCGC
GAAAGCTGTTCGTTCTCGTGCTCATCATGTGTTCGACCACCGCCCTAATTACTTGCACCA
ATGGCGGCGCCGGCGACGGAGGCGAAGGGCTCCACATGAAGCTCACCCACGTCGACGCCA
AGGGTAACTACACCGCGGAGGAGCTCGTGCGGCGCGCCGTCGCCGCCGGCAAGCAGCGGC
TGGCCTTCCTGGACGCCGCGATGGCCGGCGGCGGCGACGGCGGCGGCGTGGGCGCGCCCG
TCCGCTGGGCGACGCTGCAGTACGTCGCCGAGTACCTCATCGGCGACCCGCCGCAGCGCG
CGGAGGCGCTCATCGACACCGGCAGCGACCTCGTCTGGACGCAGTGCTCCACCTGCCTCC
GCAAGGTGTGTGCCAGGCAGGCGCTGCCGTACTACAACTCGTCGGCGTCGAGCACCTTCG
CGCCGGTGCCGTGCGCGGCGAGGATCTGCGCCGCCAACGACGACATCATCCACTTCTGCG
ATCTCGCCGCCGGCTGCTCGGTCATCGCCGGCTACGGCGCCGGCGTCGTCGCCGGCACGC
TCGGCACCGAGGCGTTCGCGTTCCAGTCGGGAACGGCGGAGCTCGCCTTCGGGTGCGTGA
CCTTCACGCGGATCGTCCAGGGCGCGCTCCATGGCGCCTCCGGCCTCATCGGCCTCGGCC
GCGGCCGCCTCTCGCTGGTGTCGCAGACCGGCGCCACCAAGTTCTCCTACTGCCTCACCC
CTTACTTCCACAACAACGGAGCCACCGGCCACCTGTTCGTCGGCGCGTCGGCGAGCTTGG
GCGGCCATGGCGACGTGATGACCACGCAGTTCGTGAAGGGCCCCAAGGGCTCCCCGTTCT
ACTACCTCCCCCTCATCGGCCTCACCGTCGGGGAGACGAGGCTGCCGATCCCGGCCACGG
TGTTCGACCTCCGGGAGGTCGCCCCGGGGCTCTTCTCCGGCGGCGTCATCATCGACTCCG
GCTCGCCGTTCACGTCGCTCGTCCACGACGCGTACGACGCGCTGGCGTCCGAGCTGGCGG
CGCGGCTGAACGGCAGCCTCGTGGCGCCGCCGCCGGACGCCGACGATGGCGCGCTGTGCG
TGGCGCGGCGCGACGTGGGCAGGGTGGTGCCGGCGGTGGTGTTCCACTTCCGCGGCGGCG
CGGACATGGCGGTGCCGGCGGAGAGCTACTGGGCGCCGGTGGACAAGGCGGCGGCGTGCA
TGGCGATCGCCAGCGCGGGGCCGTACCGGAGGCAGAGCGTGATCGGCAACTACCAGCAGC
AGAACATGCGCGTGCTCTACGACCTCGCCAATGGCGACTTCTCCTTCCAGCCTGCCGACT
GCAGCGCGCTCTGATCATCCAAGCCGCCCCGTGTCATAATTTCGTAAATAAAACCATACA
AACTTTTTATTAATCAATCATGATATAATCATTCACAAGTAATTAATTTGTGGTTAAAAA
TAAGGCAGTTAATACTGTCCGTTATTCG