Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0582800-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:24191443:24197634:1 gene:Os12g0582800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.4 description:Protein of unknown function DUF221 domain containing protein. (Os12t0582800-01)
Sequence

ATGATTCTGTCGGCGCTCGCGACTTCGGTGGGGATCAACCTGGGGCTGACGGTGCTCCTC
GCGGCGGCGTACACGCTGCTCCGGCGGCGCCCGCCGTACGTCGCCGTGTACTCGCCGCGG
CGGCCGTACGCGCCGCCGGAGCCGTGGCTGCCCGCGGCGTGGCGCCGCACCGAGGCCGAC
GTCCACGCCGCCGCCGGGCTCGACGGCGTCGTCTTCCTCCGCATCTTCGTCTTCAGCATT
AGGGTGTTCGCGGCGGCGGCGGTGGTGGGGGTGGGAGTGCTGATGCCGGTGAACTTCATG
GGGGACCAGCTGCGGCAGATTGACTTCTCCGATCTGCCCAACAAGTCCGTCGATCTCTTC
AGCGTCTCCAACGTGCAGGATGGCTCCAACAAATTGTGGCTCCACTTTTCGGCTGTGTAC
ATCATAACTGGAATTACATGCTACCTCCTTTATTATGAATACAAATATATTTCTGGCAAG
AGGCTCGAATATTTTATGACATCAAAACCACTACCTCAGCATTTCACAGTTCTAGTTCGA
GCTATACCTGTAACCAATGGTGTGTCTGTGAGTGATGCTGTTGATAAGTTCTTCAAAGAG
TACCATTCATCTACCTACTTGTCACACACTGTTGTTCATCAAACTGGCAAACTCCGCCGC
CTTCTTAATGACGCTGAGAATATTTGCACAAAGCTTGCCAACTTGAAGTCTGTACGGCGT
ACTTCTGGAGATCCTCCAGGAAAATTTCTTGGAATATTTGGCAGAAATGATCTTGTTGGG
AAATATCAGAAAAGGCTGGAGGACCTAGAAGAAAATGTTAGAATGGAACAATCAGACACT
ACTAGGAGCAGACAGGAAGTTCCCGCTGCTTTTGTGTCATTCAGATCTCGATATGGTGCT
GCAAATGCTATTTACATAAGACAATCAGACAAGCCTACTGAGTGGCAGACTGAGCATGCT
CCTGATCCCCATGACGTTTATTGGCCTTTCTTTTCAACATCATTCATGGACAGATGGATA
TCCAAGTTTGTAGTCTCTGTAGCTTCTATTCTCCTGATACTCGTCTTTCTCCTAGTTTCG
GCATTTGTTCAAGGACTCACCTATATGGAACAGCTAGAGACATGGTTGCCTTTCCTGAGA
AATATACTGGAAATAGCTGTTGTCAGTCAGTTGGTTACAGGATATCTTCCCAGTGTCATT
CTTCACTTTCTTTCCTCTTATGTGCCCTCTATAATGAAGCTGTTTTCAACAATGCAAGGA
TTCATCTCTGTTAGTGGGATTGAGAGAAGTGCTTGCAACAAAATGCTTCGGTTTACAATA
TGGAGTGTGTTCTTTGCAAATGTTCTTACTGGCTCAGTACTTGGTCAACTCGAGATATTC
CTTGATCCGAAGGAAATCCCTAAAAGGCTTGCAGTTGTTGTACCAGCACAGGCCTCTTTC
TTTATTACATATGTTGTGACATCTTGGACAAGTATAGCATCAGAACTTACTCAAACTGCT
GCCCTTTTATTCCATTTGTGGGGTAGCTGTGCAAAATGCTGCAAGAGGGATGAGTCCAAA
CCTCCATCAATGCATTACCATAGTGAAATTCCTCGGGTTCTCCTGTTTGGACTTCTTGGG
CTCACATACTTCATTGTATCCCCACTTATCCTCCCATTTGTACTGGTTTACTTCTGCCTT
GGCTACTTCATATATCGTAATCAGCTTTTTAATGTATATTCACCCAAGTATGACACTGGT
GGAAGATTCTGGCCCATTGTGCACGGGGGAACAATATTTTCTCTGGTGCTGATGCATGTT
ATTGCAATTGGAGTATTTGGATTGAAGAAACTTCCCCTTGCATCAAGTTTGCTGGTACCT
CTTCCAGTGCTGACCCTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTC
GAAGCATATTCTACTGAGTCATTGATAAAGAAAGACAGAGAAGAAGAGAGCAAACCAGAA
ATGGCAGAATTCTTCAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATC
CAACACTCCTCGAATTCAGATGAACGCACTACACCTCTATTGTCTTAG

Peptide Sequence

PEP ID

Os12t0582800-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:24191443:24197634:1 gene:Os12g0582800 transcript:Os12t0582800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.4 description:Protein of unknown function DUF221 domain containing protein. (Os12t0582800-01)
Sequence

MILSALATSVGINLGLTVLLAAAYTLLRRRPPYVAVYSPRRPYAPPEPWLPAAWRRTEAD
VHAAAGLDGVVFLRIFVFSIRVFAAAAVVGVGVLMPVNFMGDQLRQIDFSDLPNKSVDLF
SVSNVQDGSNKLWLHFSAVYIITGITCYLLYYEYKYISGKRLEYFMTSKPLPQHFTVLVR
AIPVTNGVSVSDAVDKFFKEYHSSTYLSHTVVHQTGKLRRLLNDAENICTKLANLKSVRR
TSGDPPGKFLGIFGRNDLVGKYQKRLEDLEENVRMEQSDTTRSRQEVPAAFVSFRSRYGA
ANAIYIRQSDKPTEWQTEHAPDPHDVYWPFFSTSFMDRWISKFVVSVASILLILVFLLVS
AFVQGLTYMEQLETWLPFLRNILEIAVVSQLVTGYLPSVILHFLSSYVPSIMKLFSTMQG
FISVSGIERSACNKMLRFTIWSVFFANVLTGSVLGQLEIFLDPKEIPKRLAVVVPAQASF
FITYVVTSWTSIASELTQTAALLFHLWGSCAKCCKRDESKPPSMHYHSEIPRVLLFGLLG
LTYFIVSPLILPFVLVYFCLGYFIYRNQLFNVYSPKYDTGGRFWPIVHGGTIFSLVLMHV
IAIGVFGLKKLPLASSLLVPLPVLTLLFNEYCRNRFLPIFEAYSTESLIKKDREEESKPE
MAEFFSNLVNAYCDPAMKPIQHSSNSDERTTPLLS

Transcript Sequence

Transcript ID

Os12t0582800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:24191443:24197634:1 gene:Os12g0582800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.4 description:Protein of unknown function DUF221 domain containing protein. (Os12t0582800-01)
Sequence

GTAAAAGCATAGTGAGCTCTCCCGTGCCACCGACAGGTGGGCCCCACCCGCGCGGCGGAA
GGTTCTAGGCTCTCCGGCGAAGGTTCTGGAAGGTTCGGGAGGAGGGGGGAGATGATTCTG
TCGGCGCTCGCGACTTCGGTGGGGATCAACCTGGGGCTGACGGTGCTCCTCGCGGCGGCG
TACACGCTGCTCCGGCGGCGCCCGCCGTACGTCGCCGTGTACTCGCCGCGGCGGCCGTAC
GCGCCGCCGGAGCCGTGGCTGCCCGCGGCGTGGCGCCGCACCGAGGCCGACGTCCACGCC
GCCGCCGGGCTCGACGGCGTCGTCTTCCTCCGCATCTTCGTCTTCAGCATTAGGGTGTTC
GCGGCGGCGGCGGTGGTGGGGGTGGGAGTGCTGATGCCGGTGAACTTCATGGGGGACCAG
CTGCGGCAGATTGACTTCTCCGATCTGCCCAACAAGTCCGTCGATCTCTTCAGCGTCTCC
AACGTGCAGGATGGCTCCAACAAATTGTGGCTCCACTTTTCGGCTGTGTACATCATAACT
GGAATTACATGCTACCTCCTTTATTATGAATACAAATATATTTCTGGCAAGAGGCTCGAA
TATTTTATGACATCAAAACCACTACCTCAGCATTTCACAGTTCTAGTTCGAGCTATACCT
GTAACCAATGGTGTGTCTGTGAGTGATGCTGTTGATAAGTTCTTCAAAGAGTACCATTCA
TCTACCTACTTGTCACACACTGTTGTTCATCAAACTGGCAAACTCCGCCGCCTTCTTAAT
GACGCTGAGAATATTTGCACAAAGCTTGCCAACTTGAAGTCTGTACGGCGTACTTCTGGA
GATCCTCCAGGAAAATTTCTTGGAATATTTGGCAGAAATGATCTTGTTGGGAAATATCAG
AAAAGGCTGGAGGACCTAGAAGAAAATGTTAGAATGGAACAATCAGACACTACTAGGAGC
AGACAGGAAGTTCCCGCTGCTTTTGTGTCATTCAGATCTCGATATGGTGCTGCAAATGCT
ATTTACATAAGACAATCAGACAAGCCTACTGAGTGGCAGACTGAGCATGCTCCTGATCCC
CATGACGTTTATTGGCCTTTCTTTTCAACATCATTCATGGACAGATGGATATCCAAGTTT
GTAGTCTCTGTAGCTTCTATTCTCCTGATACTCGTCTTTCTCCTAGTTTCGGCATTTGTT
CAAGGACTCACCTATATGGAACAGCTAGAGACATGGTTGCCTTTCCTGAGAAATATACTG
GAAATAGCTGTTGTCAGTCAGTTGGTTACAGGATATCTTCCCAGTGTCATTCTTCACTTT
CTTTCCTCTTATGTGCCCTCTATAATGAAGCTGTTTTCAACAATGCAAGGATTCATCTCT
GTTAGTGGGATTGAGAGAAGTGCTTGCAACAAAATGCTTCGGTTTACAATATGGAGTGTG
TTCTTTGCAAATGTTCTTACTGGCTCAGTACTTGGTCAACTCGAGATATTCCTTGATCCG
AAGGAAATCCCTAAAAGGCTTGCAGTTGTTGTACCAGCACAGGCCTCTTTCTTTATTACA
TATGTTGTGACATCTTGGACAAGTATAGCATCAGAACTTACTCAAACTGCTGCCCTTTTA
TTCCATTTGTGGGGTAGCTGTGCAAAATGCTGCAAGAGGGATGAGTCCAAACCTCCATCA
ATGCATTACCATAGTGAAATTCCTCGGGTTCTCCTGTTTGGACTTCTTGGGCTCACATAC
TTCATTGTATCCCCACTTATCCTCCCATTTGTACTGGTTTACTTCTGCCTTGGCTACTTC
ATATATCGTAATCAGCTTTTTAATGTATATTCACCCAAGTATGACACTGGTGGAAGATTC
TGGCCCATTGTGCACGGGGGAACAATATTTTCTCTGGTGCTGATGCATGTTATTGCAATT
GGAGTATTTGGATTGAAGAAACTTCCCCTTGCATCAAGTTTGCTGGTACCTCTTCCAGTG
CTGACCCTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATAT
TCTACTGAGTCATTGATAAAGAAAGACAGAGAAGAAGAGAGCAAACCAGAAATGGCAGAA
TTCTTCAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCC
TCGAATTCAGATGAACGCACTACACCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTG
CAGCCTTACTGTCATGGCGTGAATTTTGGTTTGACACCGATAATCAGGCATACAACAATA
CACCTGTGCTTCTTCTTGTGATGTTACTGTTGTAAAGCATTACTACATACTTGACTGTGG
AGTTGTTGTGCATATTTGATTTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAATA
ATGCATTGCTCCTTAATGAAGTGCTGTCAATGCAAACCTGTGTGGGTTGTACTTCTAGAT
ATGTCAAATCACCTTTATTTGTTCCCTTCAAATTTTGTGTATATGGATGTTCTTTTGCTT
CAACCTATTCAGTAATGAGATTATTTGGCAGTTGGAATGATGTGATATTAGTACTGATAC
ATTATTATCAGTTTATTTGAGTT