Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0580900-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:24066298:24069594:1 gene:Os12g0580900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein phosphatase 2C78, protein phosphatase 2C 78, protein phosphatase 131 description:Similar to Protein phosphatase 2C-like protein. (Os12t0580900-01)
Sequence	ATGCTGCTGCGGTGGCTGGCGCGGCCGGCGGAGAGGTGCCTGGGGCGAGGCGGCGGCGGC GGCGGAGGGGGAGGAGGGGATGGGTTGCTGTGGCACGCGGAGCTGAAGCCGCACGCGAGC GGGGAGTACTCCATCGCGGTGGCGCAGGCGAACGCGGAGCTGGAGGACCAGGGGCAGGTG GTGACCTCGCCGGCGGCGACCTTCGTCGGCGTCTACGACGGCCACGGTGGCCCCGAGGCG TCCCGCTTCATCTCCTCCCGCCTCTTCCCCCACCTCCACAGGTTTGCATCTGAGCAAGGT GGCATGTCCACCGATGCAATCAAGAGGGCATTCCATGCCACGGAGGAGGAGTTCTTGCAC ATGGTCAAGCGATCCTGGCTCAAGCAGCCACAGATTGCCTCGGTTGGTTCATGCTGCCTC GTCGGAGCAATCACCGATAACGTTCTATATGTCGCCAATTTAGGGGACTCGAGGGCCGTC CTTGGCCGTAGGGGGCCTGATGGTCGGGAGGTAGTGGCTGAGAGACTATCCAATGACCAC AATGTTGCAGAGGAGGAGGTCAGAAAGGAGCTCACTGAGCAGCATCCTGATGATTCACGT ATAGTCATCTATACCCGAGGAGTTTGGAGGATTAAGGGCATCATTCAGGTTTCCAGATCA ATTGGAGATGTATACCTGAAGAAGCCTGAATTTGCTAGAGACCCTATATTCCGGCAATAT GTTTGTTCCATTCCATTGAAGCGACCTGTCATGACGGCTGAACCATCGATCAAAGAACAT CAGTTGAGGCAGCAAGACTTATTCTTGATATTTGCATCGGATGGTCTGTGGGAGCAGCTA ACTGATAAAGCAGCGGTTGATATCGTCTTCAAGAATCCCAGAGCAGGGATAGCGAAGCGA TTGGTGCGAGCAGCGCTGACTGAAGCGGCGAGGAAACGAGAGATGAGATACACTGATATC AAACATATAGAGAGAGGCAGCAGGCGGAATTTCCACGACGATATCACAGTCGTTGTGGTC TATCTTGACCATCACAAGCATGGTGTGCGGCCTAATTTGGGTAACAGAAACAGTTTCCGG TTCACCAATGCGCCGGTTGACATCTTCTCCGGCAGCTCAGAAGAGGTGGATCACCACCCT CTCAGGCTGAATCTTGCAATGGATGGTGCTGTGGGTTAG

Peptide Sequence

PEP ID	Os12t0580900-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:24066298:24069594:1 gene:Os12g0580900 transcript:Os12t0580900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein phosphatase 2C78, protein phosphatase 2C 78, protein phosphatase 131 description:Similar to Protein phosphatase 2C-like protein. (Os12t0580900-01)
Sequence	MLLRWLARPAERCLGRGGGGGGGGGGDGLLWHAELKPHASGEYSIAVAQANAELEDQGQV VTSPAATFVGVYDGHGGPEASRFISSRLFPHLHRFASEQGGMSTDAIKRAFHATEEEFLH MVKRSWLKQPQIASVGSCCLVGAITDNVLYVANLGDSRAVLGRRGPDGREVVAERLSNDH NVAEEEVRKELTEQHPDDSRIVIYTRGVWRIKGIIQVSRSIGDVYLKKPEFARDPIFRQY VCSIPLKRPVMTAEPSIKEHQLRQQDLFLIFASDGLWEQLTDKAAVDIVFKNPRAGIAKR LVRAALTEAARKREMRYTDIKHIERGSRRNFHDDITVVVVYLDHHKHGVRPNLGNRNSFR FTNAPVDIFSGSSEEVDHHPLRLNLAMDGAVG

Transcript Sequence

Transcript ID	Os12t0580900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:24066298:24069594:1 gene:Os12g0580900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein phosphatase 2C78, protein phosphatase 2C 78, protein phosphatase 131 description:Similar to Protein phosphatase 2C-like protein. (Os12t0580900-01)
Sequence	AGTTTTGGTGCGAATTTCGGAGGAAATTCGGTGGGAATTTTCGGGAGGTGGAGGAAGAGA GGGAACGCGGCGATCTTTGCGGCGACGACGATGCTGCTGCGGTGGCTGGCGCGGCCGGCG GAGAGGTGCCTGGGGCGAGGCGGCGGCGGCGGCGGAGGGGGAGGAGGGGATGGGTTGCTG TGGCACGCGGAGCTGAAGCCGCACGCGAGCGGGGAGTACTCCATCGCGGTGGCGCAGGCG AACGCGGAGCTGGAGGACCAGGGGCAGGTGGTGACCTCGCCGGCGGCGACCTTCGTCGGC GTCTACGACGGCCACGGTGGCCCCGAGGCGTCCCGCTTCATCTCCTCCCGCCTCTTCCCC CACCTCCACAGGTTTGCATCTGAGCAAGGTGGCATGTCCACCGATGCAATCAAGAGGGCA TTCCATGCCACGGAGGAGGAGTTCTTGCACATGGTCAAGCGATCCTGGCTCAAGCAGCCA CAGATTGCCTCGGTTGGTTCATGCTGCCTCGTCGGAGCAATCACCGATAACGTTCTATAT GTCGCCAATTTAGGGGACTCGAGGGCCGTCCTTGGCCGTAGGGGGCCTGATGGTCGGGAG GTAGTGGCTGAGAGACTATCCAATGACCACAATGTTGCAGAGGAGGAGGTCAGAAAGGAG CTCACTGAGCAGCATCCTGATGATTCACGTATAGTCATCTATACCCGAGGAGTTTGGAGG ATTAAGGGCATCATTCAGGTTTCCAGATCAATTGGAGATGTATACCTGAAGAAGCCTGAA TTTGCTAGAGACCCTATATTCCGGCAATATGTTTGTTCCATTCCATTGAAGCGACCTGTC ATGACGGCTGAACCATCGATCAAAGAACATCAGTTGAGGCAGCAAGACTTATTCTTGATA TTTGCATCGGATGGTCTGTGGGAGCAGCTAACTGATAAAGCAGCGGTTGATATCGTCTTC AAGAATCCCAGAGCAGGGATAGCGAAGCGATTGGTGCGAGCAGCGCTGACTGAAGCGGCG AGGAAACGAGAGATGAGATACACTGATATCAAACATATAGAGAGAGGCAGCAGGCGGAAT TTCCACGACGATATCACAGTCGTTGTGGTCTATCTTGACCATCACAAGCATGGTGTGCGG CCTAATTTGGGTAACAGAAACAGTTTCCGGTTCACCAATGCGCCGGTTGACATCTTCTCC GGCAGCTCAGAAGAGGTGGATCACCACCCTCTCAGGCTGAATCTTGCAATGGATGGTGCT GTGGGTTAGGTTTGTGTTTTTGCATAAAAAACCAAATATAGTCAAAAGAAAAGTGACAAA AAGGGTGAATTCTCTTTTCTGTCACATAGATTGAGCCAAACACAACTTTCACCAAGATAT CAAAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGT TTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTC TGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCA AAGACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAAATCCTCATGGA TCCTTTGCATATCTAACAAGCTAAGGATTGTTTTTTCTTTGATCCTGAAGATGTGTAGAA CACTGTGAATGGATTCAAGATTCCAAAAATATATAAATACAACCTGAGATTGCTTG