Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0580600-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:24053229:24054780:1 gene:Os12g0580600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0580600-01)
Sequence

ATGATGAGGATGGACAAGCTTGTGAGGCAATGTGACATGGAGGTGATGAAGATGGCCATG
CTCAAGCATGAGGAGACCTTCAGGCAGCAGGTTCATGAGCTGCATCGCCTGTACCGAATT
CAGAGGCAGCTGATGAGCGACCTGACCATGGCCGAGCTGAGCTCCGGCCACCGCCGCCGG
CAGCCTCGCCGGAGCAGCAAGCAACCTCGCCGCGCGCTGAACCTGCAGCTCCCCGCCGAC
GAGTACATCGTCAGCGCCGACGCCGCCGACGACAACGACGACACGGCCGAGCTGGACCTC
ACTCTCGCCGTCGGCGGCGGCCGCAGCTCCCGCAAGTGCAACGCCGCCATTGCCGCCGCC
GCCGCCGCCGCAGGTGGCTCCTCCCCCTTCGCCTCCGACTGCTCCGGCAGCGGCCTCTCG
TCGTCGCCGTCGTCGGCCGAGTACTCCGACGGCGCCGCCATGTTCCTCCACGCGCCGCCG
CCCATGCCGCCGCCGTGCCAGCGTGCAATGGCGTTCGACCTCGCCATGGGCGACGCCATG
AAGCAGCAGCAGTCGCCATGGCTGGTTCAGTGCCAGTATCTCAGCCTCAGGATGACATGA

Peptide Sequence

PEP ID

Os12t0580600-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:24053229:24054780:1 gene:Os12g0580600 transcript:Os12t0580600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0580600-01)
Sequence

MMRMDKLVRQCDMEVMKMAMLKHEETFRQQVHELHRLYRIQRQLMSDLTMAELSSGHRRR
QPRRSSKQPRRALNLQLPADEYIVSADAADDNDDTAELDLTLAVGGGRSSRKCNAAIAAA
AAAAGGSSPFASDCSGSGLSSSPSSAEYSDGAAMFLHAPPPMPPPCQRAMAFDLAMGDAM
KQQQSPWLVQCQYLSLRMT

Transcript Sequence

Transcript ID

Os12t0580600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:24053229:24054780:1 gene:Os12g0580600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0580600-01)
Sequence

ATTTCCAGCTTCACACATTCACCAGCCTCACTCTCACAACTCATACTCCTCCTTCTGAAC
CTATCTTGTTTGTCCTCTGGAAGTTGAGTAGAGGAAGAGAGGAACAGACAACAGAAACAA
GCAAGCATCTTGGTGGTTGTTTTGGATACATATACAAGCAGGGTGCAAGTGCAAGAATTG
GTGATCTGAATCCTGAATCAAAGTTGAGGGAATCACTAGGATCAATCAATCAATTCCAAG
AGGCTTAGCTGAAGCAGATGATGAGGATGGACAAGCTTGTGAGGCAATGTGACATGGAGG
TGATGAAGATGGCCATGCTCAAGCATGAGGAGACCTTCAGGCAGCAGGTTCATGAGCTGC
ATCGCCTGTACCGAATTCAGAGGCAGCTGATGAGCGACCTGACCATGGCCGAGCTGAGCT
CCGGCCACCGCCGCCGGCAGCCTCGCCGGAGCAGCAAGCAACCTCGCCGCGCGCTGAACC
TGCAGCTCCCCGCCGACGAGTACATCGTCAGCGCCGACGCCGCCGACGACAACGACGACA
CGGCCGAGCTGGACCTCACTCTCGCCGTCGGCGGCGGCCGCAGCTCCCGCAAGTGCAACG
CCGCCATTGCCGCCGCCGCCGCCGCCGCAGGTGGCTCCTCCCCCTTCGCCTCCGACTGCT
CCGGCAGCGGCCTCTCGTCGTCGCCGTCGTCGGCCGAGTACTCCGACGGCGCCGCCATGT
TCCTCCACGCGCCGCCGCCCATGCCGCCGCCGTGCCAGCGTGCAATGGCGTTCGACCTCG
CCATGGGCGACGCCATGAAGCAGCAGCAGTCGCCATGGCTGGTTCAGTGCCAGTATCTCA
GCCTCAGGATGACATGAACAGCAAGAGCAAGCTCAAGCTCAAGCTCAAGCTGTCCATGAT
CACACTGTGCTACTACTACTCTAGCTTAATTATCTTGTGTTTGTAGAAGAAGAAGAGAAG
AAGAACAAGAAGAAGCTAGCCACTAGCTTAATCATTTCCTCTCCCACTGTTAATTAATCA
ATTATTTGTTCTAGCTAGGTGATCAGTGCAGTTTGGGCAGGGGGGATTAAGTCCTAATCC
TGAATTCCTGATCCCAAAGTGTCCATTGATCATCATTTGATCGATCTTGGCTAATTAATG
AGTGCATGCTGATTGATTTGTGTCT