Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0580400-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:24037631:24039592:1 gene:Os12g0580400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYAMINE UPTAKE TRANSPORTER 2 description:Similar to neutral amino acid transport protein. (Os12t0580400-01)
Sequence

ATGACCGGAGCCTGCGAGGCGGCGCCGGCGCGGCGGCGGGGGCTGACGGTGCTCCCCCTC
GTCGCGCTCATCTTCTACGACGTGTCGGGGGGCCCCTTCGGCATCGAGGACTCGGTCCGC
GCCGGCGGCGGCGCGCTCCTCCCGATCCTGGGGTTCCTCGTCCTCCCCGTGCTCTGGTCC
CTCCCCGAGGCGCTCGTCACCGCCGAGCTCGCCTCCGCGTTCCCCACCAACGCCGGCTAC
GTCGCCTGGGTCTCCGCCGCGTTCGGCCCCGCCGCGGCGTTCCTCGTCGGGTTCTCCAAG
TGGGCGTCGGGGACGCTCGACAACGCGCTCTACCCGGTGCTCTTCCTCGACTACCTCCGC
TCCGGCGGGGGGCTCGTGCTCTCCCCGCCGGCCCGCTCCCTCGCCGTGCTCGCGCTCACC
GCCGCGCTCACCTACCTCAACTTCCGGGGGCTCCACCTCGTCGGCCTCTCCGCGCTGGCG
CTCACCGCGTTCTCGCTCTCCCCGTTCGTCGCGCTCGCCGTGCTCGCCGCCCCCAAGATC
CGCCCGTCGCGGTGGCTCGCCGTGAACGTGGCCGCCGTTGAGCCGCGCGCCTACTTCAAC
TCCATGTTCTGGAACCTCAACTACTGGGACAAGGCGAGCACGCTTGCCGGCGAGGTGGAG
GAGCCGAGGAAGACGTTCCCGAAGGCGGTGTTCGGCGCGGTGGGGCTCGTCGTGGGCGCG
TACCTCATCCCGCTCCTCGCCGGGACGGGCGCGCTGCCGTCGGAGACGGCGGGGGAGTGG
ACGGACGGGTTCTTCTCCGTGGTCGGCGACCGGATCGGCGGGCCGTGGCTGCGCGTGTGG
ATCCAGGCCGCCGCGGCCATGTCCAACATGGGGCTCTTCGAGGCCGAGATGAGCGGCGAC
TCGTTCCAGCTCCTCGGCATGGCGGAGATGGGCATGATCCCGGCGATCTTCGCGCGCAGG
TCGCGCCACGGCACGCCGACGTACAGCATCCTCTGCTCGGCCACCGGCGTCGTCATCCTC
TCCTTCATGAGCTTCCAGGAGATCGTCGAGTTCCTCAACTTCCTCTACGGCCTCGGGATG
CTCGCCGTGTTCGCCGCCTTCGTCAAGCTCCGCGTCAAGGACCCCGACCTCCCCCGCCCG
TACCGGATCCCCGTCGGCGCCGCGGGCGCCGCCGCCATGTGCGTCCCGCCCGTCGTCCTC
ATCACCACCGTCATGTGCCTCGCCTCCGCCAGGACGCTCGTCGTCAGCGCCGCCGTGGCC
GTCGCCGGCGTCGCCATGTACTACGGCGTCGAGCACATGAAGGCCACCGGCTGCGTCGAG
TTCTTGACGCCGGTGCCGCCTGACAGCCTCCGTGGATCATCATCATCATCATCCTCATCG
GCAGCGTCCGACAACGGCGGCGACGACGACGTCGAGGACGTCTGCGCCCTCCTCCTCGCC
GCCGGCGAGCACGCCGGAGAAGGCGTCAGTGTCAGCAAGGAGAATTATTAG

Peptide Sequence

PEP ID

Os12t0580400-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:24037631:24039592:1 gene:Os12g0580400 transcript:Os12t0580400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYAMINE UPTAKE TRANSPORTER 2 description:Similar to neutral amino acid transport protein. (Os12t0580400-01)
Sequence

MTGACEAAPARRRGLTVLPLVALIFYDVSGGPFGIEDSVRAGGGALLPILGFLVLPVLWS
LPEALVTAELASAFPTNAGYVAWVSAAFGPAAAFLVGFSKWASGTLDNALYPVLFLDYLR
SGGGLVLSPPARSLAVLALTAALTYLNFRGLHLVGLSALALTAFSLSPFVALAVLAAPKI
RPSRWLAVNVAAVEPRAYFNSMFWNLNYWDKASTLAGEVEEPRKTFPKAVFGAVGLVVGA
YLIPLLAGTGALPSETAGEWTDGFFSVVGDRIGGPWLRVWIQAAAAMSNMGLFEAEMSGD
SFQLLGMAEMGMIPAIFARRSRHGTPTYSILCSATGVVILSFMSFQEIVEFLNFLYGLGM
LAVFAAFVKLRVKDPDLPRPYRIPVGAAGAAAMCVPPVVLITTVMCLASARTLVVSAAVA
VAGVAMYYGVEHMKATGCVEFLTPVPPDSLRGSSSSSSSSAASDNGGDDDVEDVCALLLA
AGEHAGEGVSVSKENY

Transcript Sequence

Transcript ID

Os12t0580400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:24037631:24039592:1 gene:Os12g0580400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYAMINE UPTAKE TRANSPORTER 2 description:Similar to neutral amino acid transport protein. (Os12t0580400-01)
Sequence

ACCTGTCATTCACTCACCCACCCACCCCCCACAATATCTTCCCCTCCTCCTCACCCACGC
CCACGCGACCTCGTCGAACACCTTGTCGCCGTCGCCGTCGCCGTCGCCTCACCGGCGCCC
CACCAACCCCCAACCCCCCGCGCGGGCGGCGGCGGCGCCTATGACCGGAGCCTGCGAGGC
GGCGCCGGCGCGGCGGCGGGGGCTGACGGTGCTCCCCCTCGTCGCGCTCATCTTCTACGA
CGTGTCGGGGGGCCCCTTCGGCATCGAGGACTCGGTCCGCGCCGGCGGCGGCGCGCTCCT
CCCGATCCTGGGGTTCCTCGTCCTCCCCGTGCTCTGGTCCCTCCCCGAGGCGCTCGTCAC
CGCCGAGCTCGCCTCCGCGTTCCCCACCAACGCCGGCTACGTCGCCTGGGTCTCCGCCGC
GTTCGGCCCCGCCGCGGCGTTCCTCGTCGGGTTCTCCAAGTGGGCGTCGGGGACGCTCGA
CAACGCGCTCTACCCGGTGCTCTTCCTCGACTACCTCCGCTCCGGCGGGGGGCTCGTGCT
CTCCCCGCCGGCCCGCTCCCTCGCCGTGCTCGCGCTCACCGCCGCGCTCACCTACCTCAA
CTTCCGGGGGCTCCACCTCGTCGGCCTCTCCGCGCTGGCGCTCACCGCGTTCTCGCTCTC
CCCGTTCGTCGCGCTCGCCGTGCTCGCCGCCCCCAAGATCCGCCCGTCGCGGTGGCTCGC
CGTGAACGTGGCCGCCGTTGAGCCGCGCGCCTACTTCAACTCCATGTTCTGGAACCTCAA
CTACTGGGACAAGGCGAGCACGCTTGCCGGCGAGGTGGAGGAGCCGAGGAAGACGTTCCC
GAAGGCGGTGTTCGGCGCGGTGGGGCTCGTCGTGGGCGCGTACCTCATCCCGCTCCTCGC
CGGGACGGGCGCGCTGCCGTCGGAGACGGCGGGGGAGTGGACGGACGGGTTCTTCTCCGT
GGTCGGCGACCGGATCGGCGGGCCGTGGCTGCGCGTGTGGATCCAGGCCGCCGCGGCCAT
GTCCAACATGGGGCTCTTCGAGGCCGAGATGAGCGGCGACTCGTTCCAGCTCCTCGGCAT
GGCGGAGATGGGCATGATCCCGGCGATCTTCGCGCGCAGGTCGCGCCACGGCACGCCGAC
GTACAGCATCCTCTGCTCGGCCACCGGCGTCGTCATCCTCTCCTTCATGAGCTTCCAGGA
GATCGTCGAGTTCCTCAACTTCCTCTACGGCCTCGGGATGCTCGCCGTGTTCGCCGCCTT
CGTCAAGCTCCGCGTCAAGGACCCCGACCTCCCCCGCCCGTACCGGATCCCCGTCGGCGC
CGCGGGCGCCGCCGCCATGTGCGTCCCGCCCGTCGTCCTCATCACCACCGTCATGTGCCT
CGCCTCCGCCAGGACGCTCGTCGTCAGCGCCGCCGTGGCCGTCGCCGGCGTCGCCATGTA
CTACGGCGTCGAGCACATGAAGGCCACCGGCTGCGTCGAGTTCTTGACGCCGGTGCCGCC
TGACAGCCTCCGTGGATCATCATCATCATCATCCTCATCGGCAGCGTCCGACAACGGCGG
CGACGACGACGTCGAGGACGTCTGCGCCCTCCTCCTCGCCGCCGGCGAGCACGCCGGAGA
AGGCGTCAGTGTCAGCAAGGAGAATTATTAGTGTACAGTGATTGGAATTTATTACAGTGG
CTTCTCTTCAGTTTGAGTAAATATCTACAGAAAATGCAGAAGAATACAGTTTAGTTTTCT
GAACTCCTGATGAGCTTTTGTCAGGAAAAAAAACTGTTGTCTTATGTGATCTGAATCCTG
AAAACATGGGAGCAAATCTTGCACATGTCAAAGATTAATTTGCCCCCAAAGTGATAAATA
CAGTTTAGTTTATTAAGTACAGAGATATTCCTGTTTGTGTGATGCAGAATTGCAGAGTAG
CAGATCAATCAGAAATGAATTGAGAGACATGGGTTTTGTTGC