Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0578800-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:23952363:23956048:-1 gene:Os12g0578800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2 domain containing protein. (Os12t0578800-01)
Sequence

GCAATCCGGACGCACGCGCCCCCCGCCTGTTCTGCTTCCATCTTCTCCACGCGGATCGGC
GAGACAAGAATCAGGAAGCACCCAGCGATTGAGTCGTCATCTTTCCCTGAGCAACCCGGA
GTGCCCCACCTATTCTGCTTCCTCTTCTCCACACGGATCGTCGAGACAAGAAGCAAGAAG
CATCCAGATATGGCACCAAGAGGAAAGCCTTGGAAGCATTGTTGCAACAAGTGCGACAAG
AGCTTCCGTTCAGGGAATGCTCTTGGAGGCCACATGTCCTGCCACAGGAGTGTTGGTAAT
CAGCCAAAGAGCACGTCAAGCCCACCCACTGTTGTTGATCTGCACATGCCACTGCTGAGT
TCCTGTGATGATAATCTTTTGCTTTTGCCCCCAGAAACACAATGCCAGATGTGCTCAAAG
GTGTTCTCCACCTCCGGATCGCTGAGGGAGCACATGATGATGCACGGTGGGGAGAAGGTG
GTGGTCAAGGCTGAGGAAGAAGCTGCCGGGCTGATTGAAGCACTGGGCATTGCTGATAGC
ATGCAAGATGTAATGGTGTTTTCTTCAGTGAAGCGTAAGCGATCATTCCGATCAAAGAGG
CAGACACCAGCACTCAGTTTGGAGGAGATAGAGGCTGCAGATGCTCTCCTACTGCTTTCA
GGGTGCTTTGACAAGACTTCAGCTTATGAGGATTGCTATCTGGGAGATATAGAAGACAGT
AGCTTGAGATCCATTGTGCTGACAGAGGTTAACATGAATGCCGTGGATCGTTGTTCGGTT
CGATCTGTTGGCTCCAAGGAGCCAATAAATGATAATAACTCAGGTTACAAGGATTGCTAT
GGACAAAGTGACAAGGAAAACTGTTTGATCGTTCCCAAGGAGGAGATGGATCCAAATGAT
TTTGATCATGAGCTGGTTAGAGATGCTGCTCTCAGGAAACCAAGAACCGACAATTCAGAT
GAGGAGATGAAGTTTGGTGATCTTCCAGCTGCTGCTATGAAGGACAACAGCCACCGTTGC
AATACCTGCGGAAAGTCATTTGGATCAGGGCAGGCACTGGGAGGCCACATGCGACGTCAT
TATGTTCGGAAGTGCAATCGTCAACGGGGGGTTGCTGACCACGCTGGTTCTGTTCTTATG
AAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCAGCT
CTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGGTGT
GTCACGAGCAATCTTCAGTGA

Peptide Sequence

PEP ID

Os12t0578800-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:23952363:23956048:-1 gene:Os12g0578800 transcript:Os12t0578800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2 domain containing protein. (Os12t0578800-01)
Sequence

AIRTHAPPACSASIFSTRIGETRIRKHPAIESSSFPEQPGVPHLFCFLFSTRIVETRSKK
HPDMAPRGKPWKHCCNKCDKSFRSGNALGGHMSCHRSVGNQPKSTSSPPTVVDLHMPLLS
SCDDNLLLLPPETQCQMCSKVFSTSGSLREHMMMHGGEKVVVKAEEEAAGLIEALGIADS
MQDVMVFSSVKRKRSFRSKRQTPALSLEEIEAADALLLLSGCFDKTSAYEDCYLGDIEDS
SLRSIVLTEVNMNAVDRCSVRSVGSKEPINDNNSGYKDCYGQSDKENCLIVPKEEMDPND
FDHELVRDAALRKPRTDNSDEEMKFGDLPAAAMKDNSHRCNTCGKSFGSGQALGGHMRRH
YVRKCNRQRGVADHAGSVLMKVQKLKLRLDPILFDVTLPALTDGDCCISVGVKPEPQLWC
VTSNLQ

Transcript Sequence

Transcript ID

Os12t0578800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23952363:23956048:-1 gene:Os12g0578800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2 domain containing protein. (Os12t0578800-01)
Sequence

AAGCGGCGCGGCGAGCAGCAGCCGGCGAGGCAGGATGAACCTGGCGCAGTGTCGCGTCCA
GATTCATAGGCCGCGCCGACCTATAAGTACACTCGCGGGGCACGCTCTCTCTCTCTCCGA
GGATTGCGGTTGCAAGCAGGATAAACGGCCACCGGTAGGCGTCGGCGGAGAGGAGAGGAG
CAAGAGAGGGTGGGAAGGAGAGGCACCTCCGGATTAATTCCTCCGCGGGAGCTGGATATT
GTGAGGGAATCGAGCGATCGAGTCGTCGTCGTCTTCCCCTGAGCAATCCGGACGCACGCG
CCCCCCGCCTGTTCTGCTTCCATCTTCTCCACGCGGATCGGCGAGACAAGAATCAGGAAG
CACCCAGCGATTGAGTCGTCATCTTTCCCTGAGCAACCCGGAGTGCCCCACCTATTCTGC
TTCCTCTTCTCCACACGGATCGTCGAGACAAGAAGCAAGAAGCATCCAGATATGGCACCA
AGAGGAAAGCCTTGGAAGCATTGTTGCAACAAGTGCGACAAGAGCTTCCGTTCAGGGAAT
GCTCTTGGAGGCCACATGTCCTGCCACAGGAGTGTTGGTAATCAGCCAAAGAGCACGTCA
AGCCCACCCACTGTTGTTGATCTGCACATGCCACTGCTGAGTTCCTGTGATGATAATCTT
TTGCTTTTGCCCCCAGAAACACAATGCCAGATGTGCTCAAAGGTGTTCTCCACCTCCGGA
TCGCTGAGGGAGCACATGATGATGCACGGTGGGGAGAAGGTGGTGGTCAAGGCTGAGGAA
GAAGCTGCCGGGCTGATTGAAGCACTGGGCATTGCTGATAGCATGCAAGATGTAATGGTG
TTTTCTTCAGTGAAGCGTAAGCGATCATTCCGATCAAAGAGGCAGACACCAGCACTCAGT
TTGGAGGAGATAGAGGCTGCAGATGCTCTCCTACTGCTTTCAGGGTGCTTTGACAAGACT
TCAGCTTATGAGGATTGCTATCTGGGAGATATAGAAGACAGTAGCTTGAGATCCATTGTG
CTGACAGAGGTTAACATGAATGCCGTGGATCGTTGTTCGGTTCGATCTGTTGGCTCCAAG
GAGCCAATAAATGATAATAACTCAGGTTACAAGGATTGCTATGGACAAAGTGACAAGGAA
AACTGTTTGATCGTTCCCAAGGAGGAGATGGATCCAAATGATTTTGATCATGAGCTGGTT
AGAGATGCTGCTCTCAGGAAACCAAGAACCGACAATTCAGATGAGGAGATGAAGTTTGGT
GATCTTCCAGCTGCTGCTATGAAGGACAACAGCCACCGTTGCAATACCTGCGGAAAGTCA
TTTGGATCAGGGCAGGCACTGGGAGGCCACATGCGACGTCATTATGTTCGGAAGTGCAAT
CGTCAACGGGGGGTTGCTGACCACGCTGGTTCTGTTCTTATGAAAGTGCAAAAGCTGAAG
CTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCAGCTCTCACTGATGGAGACTGC
TGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGGTGTGTCACGAGCAATCTTCAG
TGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGG
TGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGC
CAGGAAGCAAAAAAAACCCATGTTGTCTTCCGATAGATAGTCACAAGCTCACAATACTGA
TAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTG
ATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGACGAG
CTTGTCATTTTTTTTTTGTACCAACAATCTGTAAAATCAGTTTTGCTTTGCTTTCTGTAA
ATGTCTGTACCTTGATTCTTGAAAGGAATGCTGGTCAGAATGAGGTG