Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0578400-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:23931409:23935656:1 gene:Os12g0578400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase family 79, N-terminal protein. (Os12t0578400-01)
Sequence	ATGAGGCTATGGTTTCTCATACCTCTTCTTCTCTGTTTCCCTACATTGATTCGATCCGAG GATTACTCGGATGTGACCATCGTCGTTCGGGGTGCTGAGACGATCGCTTCGACCAGCAAC GAGTTCATTTGCGCCACCATTGATTGGTGGCCTCCAGAGAAGTGCAATTATGACCAGTGT CCATGGGGGCAAGCTTCTATCTTAAATTTGGACTTGACTAATCCTTTGCTAGCTAAAGCT ATCCAAGCCTTTAGCCCTCTACGTATCAGACTTGGAGGTTCCTTACAAGATCAGGTGGTG TATGGCACGCCGAATTTAGGATCTCCATGCACCCCATTTTCAAAGAGTTCAAGTGGCCTG TTTGGATTTTCTCAAGGATGCATAACCATGGAAAGATGGGATGCTATTAATAAGATCTTT ATGGATACAGGTGCAGTTGTTACATTCGGCCTTAACGCGCTTCAAGGGCGACAGCAGATG GGCAGAGGTGTTTGGGGAGGTGCTTGGAATTCCAGTAATGCTCGGGAGTTCATGGAGTAC ACTGTTTCGATGAACTACCCTATAGACTCATGGGAATTTGGTAATGAGTTGAGTGGAAGT GGAATTGGTGCAAGTGTTGGAGCTGAACAATATGGAAAAGATATAATTGAGCTCAAGAAC ATCATCAGCCAGTTATATGGAAACTCTAGGAAACCATTGGTGGTTGCCCCAGGAGGATTC TATGACCAAAAATGGTATGCTCAGCTTCTTGATATCTCTGGTCCAAATGTTCTCGACACA ATGACTCATCATATTTACAATCTTGGTGCTGGTAACGATCCGCAAGTTGCAAATAGGATC TTGAATCCGCAGTATTTGAGCCAGAGCTCTGATACATTCAGAGATCTCCAAATGACGATA CAGCGGCATGGACCATGGTCTGCTCCCTGGGTTGGGGAAGCTGGTGGTGCATATAACAGT GGCAGCCGAAAAGTGTCTAATACTTTCCTGAATAGCTTCTGGTATCTTGATCAGCTTGGT CAGTCAGCAAAGTATGACACAAAGGTTTACTGCAGACAGACTTTGATTGGAGGCAACTAT GGCCTTCTTGATACCGAAACTTTTGTTCCAAACCCTGATTACTACAGTGCCTTGCTGTGG CATCGGCTCATGGGGAAGGGAGTTATTTCCTTAGACACCAGCGGTTCTTCGTACTTGCGT GCCTATGCGCATTGCGGAAAGCAAAAGGGCGGCGTCGCGCTCCTCATGCTCAACCTGAAC AAGAACATGGGATTCATGGTCTCAGTCAGAAATGACCTCAACATTAATTTCAGAGAAATG GCAGGGATAAAGAGGGACAACTCCTTTGTCCATGGCCTGAAGAGGACAGTCTCCTGGGTT GGGAGCAAAGCCTCGGATGGGCTGGAGAAGAGGGAGGAGTACCATCTGACTCCACAGGAT GGCAACCCTTTTGCCAGGACAGTGCTGCTCAATGGAGCTCCTCTTCAGCTCACTGGAGAT GGTGACATCCCTTCACTGCCACCAGTGATGGTCTCAGTCAATTCCCCAATCTATGTCGCC CCGCTGTCGATCGCGTTCGTCGTCTTCCCAGATTTCGAGGCTGAAGGTTGCGAACGATGA

Peptide Sequence

PEP ID	Os12t0578400-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:23931409:23935656:1 gene:Os12g0578400 transcript:Os12t0578400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase family 79, N-terminal protein. (Os12t0578400-01)
Sequence	MRLWFLIPLLLCFPTLIRSEDYSDVTIVVRGAETIASTSNEFICATIDWWPPEKCNYDQC PWGQASILNLDLTNPLLAKAIQAFSPLRIRLGGSLQDQVVYGTPNLGSPCTPFSKSSSGL FGFSQGCITMERWDAINKIFMDTGAVVTFGLNALQGRQQMGRGVWGGAWNSSNAREFMEY TVSMNYPIDSWEFGNELSGSGIGASVGAEQYGKDIIELKNIISQLYGNSRKPLVVAPGGF YDQKWYAQLLDISGPNVLDTMTHHIYNLGAGNDPQVANRILNPQYLSQSSDTFRDLQMTI QRHGPWSAPWVGEAGGAYNSGSRKVSNTFLNSFWYLDQLGQSAKYDTKVYCRQTLIGGNY GLLDTETFVPNPDYYSALLWHRLMGKGVISLDTSGSSYLRAYAHCGKQKGGVALLMLNLN KNMGFMVSVRNDLNINFREMAGIKRDNSFVHGLKRTVSWVGSKASDGLEKREEYHLTPQD GNPFARTVLLNGAPLQLTGDGDIPSLPPVMVSVNSPIYVAPLSIAFVVFPDFEAEGCER

Transcript Sequence

Transcript ID	Os12t0578400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:23931409:23935656:1 gene:Os12g0578400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase family 79, N-terminal protein. (Os12t0578400-01)
Sequence	CTACTTCCTCAAGAATCTCTCCTCTTCTTTTCTATCCAAGAACCGCTCAAAAGCTCGAAC CTTGCGCAATCTTTTTAAATCCTCCCGACCATTTCCTCCGGGTTTGATTCTGGGCAGAGA TTGCGAGGGGAAAGATACGAGCTTTTCTTGGCTTCTTTCCCCTGCATTGGGAAAGATACG AGCTGTTGCTGTTCTTGGGAAGAACAGCTTGGGACATTCTTGGGTTGGGGTTTGATTCCC AGGGGAAGAAAGCATGAGGCTATGGTTTCTCATACCTCTTCTTCTCTGTTTCCCTACATT GATTCGATCCGAGGATTACTCGGATGTGACCATCGTCGTTCGGGGTGCTGAGACGATCGC TTCGACCAGCAACGAGTTCATTTGCGCCACCATTGATTGGTGGCCTCCAGAGAAGTGCAA TTATGACCAGTGTCCATGGGGGCAAGCTTCTATCTTAAATTTGGACTTGACTAATCCTTT GCTAGCTAAAGCTATCCAAGCCTTTAGCCCTCTACGTATCAGACTTGGAGGTTCCTTACA AGATCAGGTGGTGTATGGCACGCCGAATTTAGGATCTCCATGCACCCCATTTTCAAAGAG TTCAAGTGGCCTGTTTGGATTTTCTCAAGGATGCATAACCATGGAAAGATGGGATGCTAT TAATAAGATCTTTATGGATACAGGTGCAGTTGTTACATTCGGCCTTAACGCGCTTCAAGG GCGACAGCAGATGGGCAGAGGTGTTTGGGGAGGTGCTTGGAATTCCAGTAATGCTCGGGA GTTCATGGAGTACACTGTTTCGATGAACTACCCTATAGACTCATGGGAATTTGGTAATGA GTTGAGTGGAAGTGGAATTGGTGCAAGTGTTGGAGCTGAACAATATGGAAAAGATATAAT TGAGCTCAAGAACATCATCAGCCAGTTATATGGAAACTCTAGGAAACCATTGGTGGTTGC CCCAGGAGGATTCTATGACCAAAAATGGTATGCTCAGCTTCTTGATATCTCTGGTCCAAA TGTTCTCGACACAATGACTCATCATATTTACAATCTTGGTGCTGGTAACGATCCGCAAGT TGCAAATAGGATCTTGAATCCGCAGTATTTGAGCCAGAGCTCTGATACATTCAGAGATCT CCAAATGACGATACAGCGGCATGGACCATGGTCTGCTCCCTGGGTTGGGGAAGCTGGTGG TGCATATAACAGTGGCAGCCGAAAAGTGTCTAATACTTTCCTGAATAGCTTCTGGTATCT TGATCAGCTTGGTCAGTCAGCAAAGTATGACACAAAGGTTTACTGCAGACAGACTTTGAT TGGAGGCAACTATGGCCTTCTTGATACCGAAACTTTTGTTCCAAACCCTGATTACTACAG TGCCTTGCTGTGGCATCGGCTCATGGGGAAGGGAGTTATTTCCTTAGACACCAGCGGTTC TTCGTACTTGCGTGCCTATGCGCATTGCGGAAAGCAAAAGGGCGGCGTCGCGCTCCTCAT GCTCAACCTGAACAAGAACATGGGATTCATGGTCTCAGTCAGAAATGACCTCAACATTAA TTTCAGAGAAATGGCAGGGATAAAGAGGGACAACTCCTTTGTCCATGGCCTGAAGAGGAC AGTCTCCTGGGTTGGGAGCAAAGCCTCGGATGGGCTGGAGAAGAGGGAGGAGTACCATCT GACTCCACAGGATGGCAACCCTTTTGCCAGGACAGTGCTGCTCAATGGAGCTCCTCTTCA GCTCACTGGAGATGGTGACATCCCTTCACTGCCACCAGTGATGGTCTCAGTCAATTCCCC AATCTATGTCGCCCCGCTGTCGATCGCGTTCGTCGTCTTCCCAGATTTCGAGGCTGAAGG TTGCGAACGATGATTTCGAGTTTAGATAGAAATATCATGAGGTTTTTCTTTTCTGATGTG ATGATATAGGTGTTCTCAGGGTTACATCCACTGTAAAGATTTTTCTGTGTTTCTAGTTTT TTCCCCAATTGGGCTATATATAGAATAACTTGATTCCAGTGTTTACTGATCAGTATGTAG CAAGCCTGCAGTTCCATTCCCTTCTATGTTTGGTTGGGTCACAATGAAGCACATTTGATG TAGTG