Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0577800-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:23892748:23894257:-1 gene:Os12g0577800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF863, plant family protein. (Os12t0577800-01);Hypothetical conserved gene. (Os12t0577800-02)
Sequence

CAGAATGGTTTCTTCAACGGCTTCTCAGTGGATTCTATCAATACTCCAATGGCAACTAAT
CATTATCATAACCAACGTTCTTCAAAGTTTCCAGGAGAACCTCAATATCAAAAGCATTCC
CCACTCCATGGTGTGAATCTGAATGATACCCCTCAAGATGTCACTGCTATTCAGGAACAG
GGAAGTGAGAATTCACCGGTTGATATATCTTGGCTCAGGAAGGACCCTGTAGATCTGATG
AAGTCACAAGTGCAACCAAGTTGTGCAAATGGCCAATCCCAGATTTCATTAGGTTCCACA
GCTTATTCAGAAGGTAGCACAAGAGTACTCGGTTTCCCTATCAATGCAGCCGCTGAAAGA
AACACCGAACCATTGATCAAGCGCGAAGCTGACATGGAAATGCACAAGAAAGATGATGCA
AATGCGAGGAATCTCATTGACCTCAATGCCGCGCCTTCCATGGATGAGCCAGACATTGAT
GTCCATCAGTCAGAAGGTGGCACTGTTCCTCAGCAACCAGATGATCCTTCTGAGGACTCT
CTTGCTAGAACTGCAGCAGAGAGCCTAGTAGCCTTGTGTAAAGATGTCTTTCAAGCAGGG
TCTCCCCTTGCTGACATTTTGCATTGGTTCGCTGACCTCGCTATTGCATCGAAGGAGGAT
GCAGTGGTCTGTAGTAGCGAAAGTGACAGCGATGATGAATTTGAAGCTTTGACACTGCAG
CTAGAAGAAACCAAAGGCTATGAGCTCTACTCAACACCGAAAACACCAGTAGAGCATAAG
AGCAATGAAGACCATGGCTCTGTTGCAGCCTCACTGCTTCAGACAAAACCTCGAAGAGGC
CGAGCACGAAAGCGTCCCCAGAAGAAAGATTTCCAGAAGGACATTCTACCAAACCTCGCT
TCGCTGTCGAAGCACGAGGTGTCAGAGGATCTTCACACCCTTGGAAGGTCAACGCCATCG
AAGCGGGGAGGTCGAAACGGATCGCAGTCCAGGGGGAGGCGCCGAGCAAGAAGCGTGGCT
ATCGCTGTTGAGGAAGTTGAGGTAAGCCCACCTCCAGCTCCAGCGCCGCCACCTCCTCCC
CCAGCTGACTTGGACGCTAATGCTCTCGGCATAACTGGGTGGGGAAGAACAACCAGGCGC
TGCCGTCGACCGAGATGCCCTCCGGCGAACAATGCGTCATTGCGTCTAGCTTGA

Peptide Sequence

PEP ID

Os12t0577800-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:23892748:23894257:-1 gene:Os12g0577800 transcript:Os12t0577800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF863, plant family protein. (Os12t0577800-01);Hypothetical conserved gene. (Os12t0577800-02)
Sequence

QNGFFNGFSVDSINTPMATNHYHNQRSSKFPGEPQYQKHSPLHGVNLNDTPQDVTAIQEQ
GSENSPVDISWLRKDPVDLMKSQVQPSCANGQSQISLGSTAYSEGSTRVLGFPINAAAER
NTEPLIKREADMEMHKKDDANARNLIDLNAAPSMDEPDIDVHQSEGGTVPQQPDDPSEDS
LARTAAESLVALCKDVFQAGSPLADILHWFADLAIASKEDAVVCSSESDSDDEFEALTLQ
LEETKGYELYSTPKTPVEHKSNEDHGSVAASLLQTKPRRGRARKRPQKKDFQKDILPNLA
SLSKHEVSEDLHTLGRSTPSKRGGRNGSQSRGRRRARSVAIAVEEVEVSPPPAPAPPPPP
PADLDANALGITGWGRTTRRCRRPRCPPANNASLRLA

Transcript Sequence

Transcript ID

Os12t0577800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23892748:23894257:-1 gene:Os12g0577800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF863, plant family protein. (Os12t0577800-01);Hypothetical conserved gene. (Os12t0577800-02)
Sequence

CAGAATGGTTTCTTCAACGGCTTCTCAGTGGATTCTATCAATACTCCAATGGCAACTAAT
CATTATCATAACCAACGTTCTTCAAAGTTTCCAGGAGAACCTCAATATCAAAAGCATTCC
CCACTCCATGGTGTGAATCTGAATGATACCCCTCAAGATGTCACTGCTATTCAGGAACAG
GGAAGTGAGAATTCACCGGTTGATATATCTTGGCTCAGGAAGGACCCTGTAGATCTGATG
AAGTCACAAGTGCAACCAAGTTGTGCAAATGGCCAATCCCAGATTTCATTAGGTTCCACA
GCTTATTCAGAAGGTAGCACAAGAGTACTCGGTTTCCCTATCAATGCAGCCGCTGAAAGA
AACACCGAACCATTGATCAAGCGCGAAGCTGACATGGAAATGCACAAGAAAGATGATGCA
AATGCGAGGAATCTCATTGACCTCAATGCCGCGCCTTCCATGGATGAGCCAGACATTGAT
GTCCATCAGTCAGAAGGTGGCACTGTTCCTCAGCAACCAGATGATCCTTCTGAGGACTCT
CTTGCTAGAACTGCAGCAGAGAGCCTAGTAGCCTTGTGTAAAGATGTCTTTCAAGCAGGG
TCTCCCCTTGCTGACATTTTGCATTGGTTCGCTGACCTCGCTATTGCATCGAAGGAGGAT
GCAGTGGTCTGTAGTAGCGAAAGTGACAGCGATGATGAATTTGAAGCTTTGACACTGCAG
CTAGAAGAAACCAAAGGCTATGAGCTCTACTCAACACCGAAAACACCAGTAGAGCATAAG
AGCAATGAAGACCATGGCTCTGTTGCAGCCTCACTGCTTCAGACAAAACCTCGAAGAGGC
CGAGCACGAAAGCGTCCCCAGAAGAAAGATTTCCAGAAGGACATTCTACCAAACCTCGCT
TCGCTGTCGAAGCACGAGGTGTCAGAGGATCTTCACACCCTTGGAAGGTCAACGCCATCG
AAGCGGGGAGGTCGAAACGGATCGCAGTCCAGGGGGAGGCGCCGAGCAAGAAGCGTGGCT
ATCGCTGTTGAGGAAGTTGAGGTAAGCCCACCTCCAGCTCCAGCGCCGCCACCTCCTCCC
CCAGCTGACTTGGACGCTAATGCTCTCGGCATAACTGGGTGGGGAAGAACAACCAGGCGC
TGCCGTCGACCGAGATGCCCTCCGGCGAACAATGCGTCATTGCGTCTAGCTTGAGAGAGA
ATTTTAGGTGCCTTAGCTGACGGGAAATGATCTTGAAACTGTATTTTTGGGTGGAGTTGC
AGAGAAATTTGTGTCCTTGGTAGCTTGACAGTAATCAATCAACATTGTACATGCTGCTCA
GCCCCTAATTTGGGGCTCCAGAAACCTGCATTGGATAAAAAAACATGGTGTACATCTCTT
TGTTTCGGTATAAACTCTGATTCTAGATAGCAATGCACCTGAAGAACAGGCCTTGTGAAA
CCTGGAATATCAGTTGTAATTAGATTTAGCTCCTTGAATATCAGTCTGTGATGTCATGTT
CTGAGTTCAG