Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os12t0577600-01
CDS Infomation	cds chromosome:IRGSP-1.0:12:23879858:23884977:1 gene:Os12g0577600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1336 domain containing protein. (Os12t0577600-01)
Sequence	ATGGGTGCCTGCGTGTCTTCAAGCAAAAAACGGAGATCACAGAAATTGTGCTGTATATAC CGGCGTTACCGCGGAAAAGTTTTGAGCAATGCACCTATAGTACGCGCCAGTGATGCAGGG AGCCGTGCTGCTCCTGGAGAAGTTGTTCATGTGGAGGCTAAATCTGATGGCTCGAATGTA ACATTTCATCTCACACAGTTGCAGTGGCATCATAGTGAGCTAGACTCAGAAAATGGAAAT GTTGTGTGTCAAGAAGAAGCATGGTTCGACTCTCTCAGTATTTTAGGATCTGATTCTGAT GAAGATTTCAGCAGTGTTAATGGAGACCTCCCTGCAATGTCAAATTCAGCGGGTACACAA TTAATGCACTGTGAAGATGCTTCAAGCATTGCTGATGCAATCCAGAAGTTTGAGAGGATT TTTGATGGTTCATGTGTTGCTCAAGCCATTGGACAATACCTGAAAAGAGACGCGAACAAA ATGGATAGACCAAACCAAGCAGATATTCAAGAATCGGAGAAGCCTAAAATTCCAAGCCCA GAATCATGTGATGTATCTGATGTGAAGGTTGATGAAACAAAGACTAGAAATGAGGGTATA AAAATTCTGACAAAACTCAGAAGAGGCGAGGATGCATGTAATACGTTGAAATCTTCGAAA GAAGGAGACAAGGCTCATGAAAGTATCTTCAAAAGTTTGACACCAGTGTGCACGCCTCGC CATGCTAATAAGGTTCAGCCTTTGGCCGTAGCAAGTCCTCGGGGCCAAAAGAAGAAATCA GGAGTTGTCAGGCTCTCTTTCAAGAGGAAATCTTTTGATGGAGAACAAACTACTGAAATA TGCTCTTCTAGGAGGTACTTGATTCATCCAAGAGCTGGATTGTTGGTTCCTCAAGGCAGT GAGAAAATATCAGAAAGTTGTTGGTCCGTTCTTGAGCCATCGACCTTCAAACTACGTGGA GAAACCTTTTTTAAAGACAAAAAGAAGTTGCCTGCCCCAGGAAGTTCACCGTATACTCCG ATTGGTGTGGACATGTTCATGTCCCCAAGGAAAATTCATCACATTGCGCAGCATATTGAG CTTCCATCTGCTGGGCCAAGCGAGAAAATTCCTTCCTTACTTATCGTTAATATTCAGATG CCTACATATCCTACTGCTATGTTCCTTGGTGATAGTGATGGGGAAGGCATTAGTCTAGTG TTGTATTTCAAACTGAATGAGAACTATGAGAAGGAAATTTCTCCTCTGTTTCTTGATAGT ATAAAGAGACTTGTAAATGATGAGATAGAAAAGGTTAAGGGGTTCCCATTAGATTCAACG GTTCCGTACCGAGAAAGATTGAAAATATTGGCAGGGTTAGTAAACCCTGATGATATGAAT CTGAGTTCTGCAGAGAGGAAGCTTGTGCAGGCTTATAATGAAAAGCCAGTCCTTTCGCGA CCTCAACACAATTTTTATGTGGGACCAAATTACTTTGAGATAGACCTTGACGTGCACCGG TTTAGCTTCATCTCAAGGAAAGGGCTTGAAGCGTTTCGAGAAAGGTTGAAACATGGTGTC ATTGATCTAGGTTTAACCATACAGGCACAGAAGCAGGAAGAACTCCCTGAGAATGTCCTA TGCTGTGTAAGGCTGAACAGAGTCGATTTCGTCGATCATGGGCAGATACCGACGCTCTTG CCTTGCGACGACGACTGA

Peptide Sequence

PEP ID	Os12t0577600-01
PEP Infomation	pep chromosome:IRGSP-1.0:12:23879858:23884977:1 gene:Os12g0577600 transcript:Os12t0577600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1336 domain containing protein. (Os12t0577600-01)
Sequence	MGACVSSSKKRRSQKLCCIYRRYRGKVLSNAPIVRASDAGSRAAPGEVVHVEAKSDGSNV TFHLTQLQWHHSELDSENGNVVCQEEAWFDSLSILGSDSDEDFSSVNGDLPAMSNSAGTQ LMHCEDASSIADAIQKFERIFDGSCVAQAIGQYLKRDANKMDRPNQADIQESEKPKIPSP ESCDVSDVKVDETKTRNEGIKILTKLRRGEDACNTLKSSKEGDKAHESIFKSLTPVCTPR HANKVQPLAVASPRGQKKKSGVVRLSFKRKSFDGEQTTEICSSRRYLIHPRAGLLVPQGS EKISESCWSVLEPSTFKLRGETFFKDKKKLPAPGSSPYTPIGVDMFMSPRKIHHIAQHIE LPSAGPSEKIPSLLIVNIQMPTYPTAMFLGDSDGEGISLVLYFKLNENYEKEISPLFLDS IKRLVNDEIEKVKGFPLDSTVPYRERLKILAGLVNPDDMNLSSAERKLVQAYNEKPVLSR PQHNFYVGPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVIDLGLTIQAQKQEELPENVL CCVRLNRVDFVDHGQIPTLLPCDDD

Transcript Sequence

Transcript ID	Os12t0577600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:12:23879858:23884977:1 gene:Os12g0577600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1336 domain containing protein. (Os12t0577600-01)
Sequence	GCTCGCTGCCACCGCCTCCTTCGCTGCCACCATCTCCTTCGCCGCCGGGCACCATCGCCG GCGGTGGCCGGGTTCATGCTGTCCTGAAGGAGTGGAATGCTCGTCGGTGATTAGTAGGTC ACCAGAATATCTTCTCTCCTAGCCTCCTGGGCTTGTTTACCCAATTTATCATCAGGTATT TCTAGCTCCATGTAATCAGCCAAAAACAAGTTGTTCTTCATTTGGTGGTCCCTTCCCTAT GTTGGCATTGGTGCAGTAAGGAGATCTATGCTTTTGTTGCATCTTGTAAGCATTTTCCTC CAAGGTTATGCTTATTTTCGGTTGATAATCCAGTTTCTTTTTTTTACCATAAGTTCATCC TGGTTTCATATGCATGGATGCTTTTTTTTTCTCCTGCTATTTTTTTCGTAAAAAAAGAAT GCATCTTTTTCCTGTTTCACTGGTTAAAAGTTCCATTCAAGTTCTGAGCATAATACACTG AAGATCTTCAGAAGGGAGAAAAATAAATTAGTTCTTCAGAAATAGATAGCCAGATTGTTA TTATAACGCAAGAAGCATCACATGGATGTGCAACCAACATCTATCTAAAGACTGCAATCT AGGATACAGAATGAATTTATCTTCATATTCCGGAAAGCAGGTTTGTTAATTAATCTCTTT GGAATTTCTGTGGCTTGTAGCTTCCTGAAATCTGAAGAAAATAAATTCGGTTTTACTACC ACCATGGGTGCCTGCGTGTCTTCAAGCAAAAAACGGAGATCACAGAAATTGTGCTGTATA TACCGGCGTTACCGCGGAAAAGTTTTGAGCAATGCACCTATAGTACGCGCCAGTGATGCA GGGAGCCGTGCTGCTCCTGGAGAAGTTGTTCATGTGGAGGCTAAATCTGATGGCTCGAAT GTAACATTTCATCTCACACAGTTGCAGTGGCATCATAGTGAGCTAGACTCAGAAAATGGA AATGTTGTGTGTCAAGAAGAAGCATGGTTCGACTCTCTCAGTATTTTAGGATCTGATTCT GATGAAGATTTCAGCAGTGTTAATGGAGACCTCCCTGCAATGTCAAATTCAGCGGGTACA CAATTAATGCACTGTGAAGATGCTTCAAGCATTGCTGATGCAATCCAGAAGTTTGAGAGG ATTTTTGATGGTTCATGTGTTGCTCAAGCCATTGGACAATACCTGAAAAGAGACGCGAAC AAAATGGATAGACCAAACCAAGCAGATATTCAAGAATCGGAGAAGCCTAAAATTCCAAGC CCAGAATCATGTGATGTATCTGATGTGAAGGTTGATGAAACAAAGACTAGAAATGAGGGT ATAAAAATTCTGACAAAACTCAGAAGAGGCGAGGATGCATGTAATACGTTGAAATCTTCG AAAGAAGGAGACAAGGCTCATGAAAGTATCTTCAAAAGTTTGACACCAGTGTGCACGCCT CGCCATGCTAATAAGGTTCAGCCTTTGGCCGTAGCAAGTCCTCGGGGCCAAAAGAAGAAA TCAGGAGTTGTCAGGCTCTCTTTCAAGAGGAAATCTTTTGATGGAGAACAAACTACTGAA ATATGCTCTTCTAGGAGGTACTTGATTCATCCAAGAGCTGGATTGTTGGTTCCTCAAGGC AGTGAGAAAATATCAGAAAGTTGTTGGTCCGTTCTTGAGCCATCGACCTTCAAACTACGT GGAGAAACCTTTTTTAAAGACAAAAAGAAGTTGCCTGCCCCAGGAAGTTCACCGTATACT CCGATTGGTGTGGACATGTTCATGTCCCCAAGGAAAATTCATCACATTGCGCAGCATATT GAGCTTCCATCTGCTGGGCCAAGCGAGAAAATTCCTTCCTTACTTATCGTTAATATTCAG ATGCCTACATATCCTACTGCTATGTTCCTTGGTGATAGTGATGGGGAAGGCATTAGTCTA GTGTTGTATTTCAAACTGAATGAGAACTATGAGAAGGAAATTTCTCCTCTGTTTCTTGAT AGTATAAAGAGACTTGTAAATGATGAGATAGAAAAGGTTAAGGGGTTCCCATTAGATTCA ACGGTTCCGTACCGAGAAAGATTGAAAATATTGGCAGGGTTAGTAAACCCTGATGATATG AATCTGAGTTCTGCAGAGAGGAAGCTTGTGCAGGCTTATAATGAAAAGCCAGTCCTTTCG CGACCTCAACACAATTTTTATGTGGGACCAAATTACTTTGAGATAGACCTTGACGTGCAC CGGTTTAGCTTCATCTCAAGGAAAGGGCTTGAAGCGTTTCGAGAAAGGTTGAAACATGGT GTCATTGATCTAGGTTTAACCATACAGGCACAGAAGCAGGAAGAACTCCCTGAGAATGTC CTATGCTGTGTAAGGCTGAACAGAGTCGATTTCGTCGATCATGGGCAGATACCGACGCTC TTGCCTTGCGACGACGACTGACATTTTAACCGGCATGCTAATTTAACTGGATCTGATGCT TCAGTCAAGAGCAGTAGGCCAGTAGCAGGCGACCACAAGTTCTGTCCTGTGAAACTTGAT GAACTCACCTTGGTTTTGGGAGGGTGAACATGGCATGGTTGCTTCTTCGCTCTGGTCCAT GAGATCAACGGCTCTACTTCAGAGTTCTGTAAAAACCAGCGTACATAGTCATGCATGTTG TTTGGAAATCTGGTTTGTGGATGAATTCTATGGGAAATTTGTTCTGCAAATCAGGAATTG GCTGGTACCAATCAATCTATTCATTCAATTCATCTGTTCTC