Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0576700-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:23810618:23814363:-1 gene:Os12g0576700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PURPLE ACID PHOSPHATASE 1C description:Similar to Diphosphonucleotide phosphatase 1 precursor. (Os12t0576700-01)
Sequence

ATGATCAGGCTGTGGGTGGTGGTCACATGGCTGGTTCTTTGGGCCGCAGCTGCGGTGCAC
CCCGGGGAGCAGCCGCTGTCGAGGATTGCCGTCGAGAGGATGGTCCTTGCCGTCAACGAG
TCGGCACATGTCAGGGCGTCCCCTTTGGTTCTTGGGCTGAAGGGTGAGACCAATGAATGG
GTAGAGGTAGAGTTCTTCAATCCAAACCCCTCCAATACTGACTGGGTTGGAGTGTTTTCT
CCTGCTGATTTTAGTTCTGCAATCTGTGAGGCTTATGGTGTTCCACAGTATTACCCAATG
CTCTGCACAGCACCTATCAAGTACCAATATGCAAACTTCAATAATAATGGTTATAGTAAG
TCTGGGAAGGGCAAACTGAAGCTTCAGTTGATCAACCAGAGGGAGGATTTCTCATTTGCT
CTTTTTTCTGGTGGCCTCGAGAATCCAAAGCTGGTTGCTGTCTCAAACAAGATCGCATTT
GCGAATCCGAAGGCGCCTGTTTACCCACGTTTAGCTCAAGGGAAGTCTTGGAATGAAATG
ACAGTAACTTGGACAAGTGGGTACGATTTTAAAGAAGCAGTTCCTTTCGTCGAATGGGGC
GCGAAAGGGGGACAACGGGTCCTTTCTCCAGCTGGAACATTAACATTTGACAGAAATAGC
ATGTGTGGTGCACCGGCACGAACTGTCGGTTGGCGCCATCCTGGTTACATTCATACAAGC
TACTTGAAAGAACTGTGGCCAGATTCACTGTATACTTACAGACTTGGCCATAGGTTACCA
AATGGTACTCACATCTGGAGTAAGTCATACAGCTTCAAAGCATCACCTTATCCTGGGCAA
GATTCCGTTCAGAGAGTAGTCATATTTGGAGACATGGGAAAGGCAGAGGCAGACGGTTCA
AATGAGTTCAATGACTTCCAGCCAGGATCATTGAACACTACTTACCAGATCATCAGAGAC
CTGAAAAACATTGACATGGTTGTCCATATTGGGGATATTTGCTATGCAAATGGTTACTTG
TCGCAGTGGGATCAGTTCACTGCGCAGATCGAGCCAATTGCTTCGACTGTTCCATACATG
ATTGGCATGGGTAATCATGAGAGGGATTGGCCTGGAACTGGTTCATTCTATGGAAACCTT
GACTCTGGAGGAGAATGTGGTGTTCCTGCTCAAACTGTATTCTACACTCCTGCTGAGAAC
CGTGCAAAATTATGGTATGCGACAGACTATGGCATGTTCAGGTTCTGCATTGCTAATACA
GAAGAGGACTGGAGGCCAGGGACTGAGCAGTACAAGTTCATCGAGCAATGCCTATCGTCC
GTCGACAGGCAGAAGCAGCCATGGCTCATATTCCTTGCGCACCGAGTTCTCGGGTACTCA
TCCTGCACCTTTTATGAAGAAGAGGGTACATTTGAGGAACCGATGGGCCGAGAATCACTA
CAGGAGCTTTGGCAGAAGTACAAGGTTGACCTCGCCTTCTATGGCCATGTCCACAACTAT
GAAAGAACATGCCCAGTCTATCAGAATAAATGTGTTGTTAGTGGTTCAGATCATTACAGT
GGTCCTTTCACCGCGACAACACATGTGGTCGTTGGAGGTGCTGGTGCTGGTACCTCCGAC
TCAGAATTCACCACTTCAAATATCAAATGGAGTTACTACAGGGACTTTGACTACGGTTTT
GTCAAGCTCACAGCTTTAAATCATTCATCCTTATTGTTTGAGTACAAGAAAAGCAGTGAC
GGCAATGTGTATGATCATTTCACAATCTCACGTGATTACCGAGACATCCTGGCTTGTTCA
ATTGACAACTGTCCTCGGACCACACTGGCTACCTAA

Peptide Sequence

PEP ID

Os12t0576700-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:23810618:23814363:-1 gene:Os12g0576700 transcript:Os12t0576700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PURPLE ACID PHOSPHATASE 1C description:Similar to Diphosphonucleotide phosphatase 1 precursor. (Os12t0576700-01)
Sequence

MIRLWVVVTWLVLWAAAAVHPGEQPLSRIAVERMVLAVNESAHVRASPLVLGLKGETNEW
VEVEFFNPNPSNTDWVGVFSPADFSSAICEAYGVPQYYPMLCTAPIKYQYANFNNNGYSK
SGKGKLKLQLINQREDFSFALFSGGLENPKLVAVSNKIAFANPKAPVYPRLAQGKSWNEM
TVTWTSGYDFKEAVPFVEWGAKGGQRVLSPAGTLTFDRNSMCGAPARTVGWRHPGYIHTS
YLKELWPDSLYTYRLGHRLPNGTHIWSKSYSFKASPYPGQDSVQRVVIFGDMGKAEADGS
NEFNDFQPGSLNTTYQIIRDLKNIDMVVHIGDICYANGYLSQWDQFTAQIEPIASTVPYM
IGMGNHERDWPGTGSFYGNLDSGGECGVPAQTVFYTPAENRAKLWYATDYGMFRFCIANT
EEDWRPGTEQYKFIEQCLSSVDRQKQPWLIFLAHRVLGYSSCTFYEEEGTFEEPMGRESL
QELWQKYKVDLAFYGHVHNYERTCPVYQNKCVVSGSDHYSGPFTATTHVVVGGAGAGTSD
SEFTTSNIKWSYYRDFDYGFVKLTALNHSSLLFEYKKSSDGNVYDHFTISRDYRDILACS
IDNCPRTTLAT

Transcript Sequence

Transcript ID

Os12t0576700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23810618:23814363:-1 gene:Os12g0576700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PURPLE ACID PHOSPHATASE 1C description:Similar to Diphosphonucleotide phosphatase 1 precursor. (Os12t0576700-01)
Sequence

AAGGAGTTCTTGAAGTTGCTACCTTTTACTTGGTCTCTGAAGGAGGAGTATGATCAGGCT
GTGGGTGGTGGTCACATGGCTGGTTCTTTGGGCCGCAGCTGCGGTGCACCCCGGGGAGCA
GCCGCTGTCGAGGATTGCCGTCGAGAGGATGGTCCTTGCCGTCAACGAGTCGGCACATGT
CAGGGCGTCCCCTTTGGTTCTTGGGCTGAAGGGTGAGACCAATGAATGGGTAGAGGTAGA
GTTCTTCAATCCAAACCCCTCCAATACTGACTGGGTTGGAGTGTTTTCTCCTGCTGATTT
TAGTTCTGCAATCTGTGAGGCTTATGGTGTTCCACAGTATTACCCAATGCTCTGCACAGC
ACCTATCAAGTACCAATATGCAAACTTCAATAATAATGGTTATAGTAAGTCTGGGAAGGG
CAAACTGAAGCTTCAGTTGATCAACCAGAGGGAGGATTTCTCATTTGCTCTTTTTTCTGG
TGGCCTCGAGAATCCAAAGCTGGTTGCTGTCTCAAACAAGATCGCATTTGCGAATCCGAA
GGCGCCTGTTTACCCACGTTTAGCTCAAGGGAAGTCTTGGAATGAAATGACAGTAACTTG
GACAAGTGGGTACGATTTTAAAGAAGCAGTTCCTTTCGTCGAATGGGGCGCGAAAGGGGG
ACAACGGGTCCTTTCTCCAGCTGGAACATTAACATTTGACAGAAATAGCATGTGTGGTGC
ACCGGCACGAACTGTCGGTTGGCGCCATCCTGGTTACATTCATACAAGCTACTTGAAAGA
ACTGTGGCCAGATTCACTGTATACTTACAGACTTGGCCATAGGTTACCAAATGGTACTCA
CATCTGGAGTAAGTCATACAGCTTCAAAGCATCACCTTATCCTGGGCAAGATTCCGTTCA
GAGAGTAGTCATATTTGGAGACATGGGAAAGGCAGAGGCAGACGGTTCAAATGAGTTCAA
TGACTTCCAGCCAGGATCATTGAACACTACTTACCAGATCATCAGAGACCTGAAAAACAT
TGACATGGTTGTCCATATTGGGGATATTTGCTATGCAAATGGTTACTTGTCGCAGTGGGA
TCAGTTCACTGCGCAGATCGAGCCAATTGCTTCGACTGTTCCATACATGATTGGCATGGG
TAATCATGAGAGGGATTGGCCTGGAACTGGTTCATTCTATGGAAACCTTGACTCTGGAGG
AGAATGTGGTGTTCCTGCTCAAACTGTATTCTACACTCCTGCTGAGAACCGTGCAAAATT
ATGGTATGCGACAGACTATGGCATGTTCAGGTTCTGCATTGCTAATACAGAAGAGGACTG
GAGGCCAGGGACTGAGCAGTACAAGTTCATCGAGCAATGCCTATCGTCCGTCGACAGGCA
GAAGCAGCCATGGCTCATATTCCTTGCGCACCGAGTTCTCGGGTACTCATCCTGCACCTT
TTATGAAGAAGAGGGTACATTTGAGGAACCGATGGGCCGAGAATCACTACAGGAGCTTTG
GCAGAAGTACAAGGTTGACCTCGCCTTCTATGGCCATGTCCACAACTATGAAAGAACATG
CCCAGTCTATCAGAATAAATGTGTTGTTAGTGGTTCAGATCATTACAGTGGTCCTTTCAC
CGCGACAACACATGTGGTCGTTGGAGGTGCTGGTGCTGGTACCTCCGACTCAGAATTCAC
CACTTCAAATATCAAATGGAGTTACTACAGGGACTTTGACTACGGTTTTGTCAAGCTCAC
AGCTTTAAATCATTCATCCTTATTGTTTGAGTACAAGAAAAGCAGTGACGGCAATGTGTA
TGATCATTTCACAATCTCACGTGATTACCGAGACATCCTGGCTTGTTCAATTGACAACTG
TCCTCGGACCACACTGGCTACCTAAAGCATGAACAGTTCTAGACAGGTTTACAGGTAGAT
TGATTGACAGGGCCTCAAAGAGCAATCTAGTTCCTGTACAAAGTCTTTTGGGACTATTCC
AATAAATCATAATAAACACGGAATTTTCTTGACTGCGT