Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0576300-02
CDS Infomation

cds chromosome:IRGSP-1.0:12:23794337:23796879:-1 gene:Os12g0576300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0576300-01);Conserved hypothetical protein. (Os12t0576300-02)
Sequence

TGCACGTTTGGGCCAGCTCCCTCCCCCGCTTCTGCTAGGCCGTTCATCGTAACAGATGGA
AGGAGAGTCATTAGTAAGTCACGTTATCAACCAGTGCCTGTACCATTTCATATTGGATTT
GAGAAGGAAGGGCGTCGAAACAGCTCAGAAATGGTGGAAAGTGTAATTGGGATTGCTCCT
CTACCTGAGCTGAAGAAATCAAAAAGGGAGAGGCAGGGATCACACAATGGAGGGATGGGT
TTGTCTGCTTTCGAGAGTAGTAAGCCATCAAAATCAACAGATTTACTTGCTCGACTGCGC
ATATTCTCTACTGGTGTCAGTATTGGTATTATATCATCCACTTTATCAAACAAGAATGAG
CTTGATGCATTAAAGGGTACAGTGAAACGAATGGAGAACTTGATTCAAGATCTGCATGAT
GAGCTGGAGATGAGAGAGGGTTTAACTGTAAAGGAATTGCCTAATGAAATGTCTGTAAAA
ATTGATGATGATGAGAGCAAAGCTCATGTAACTGATTCAGAGCCCATGAGCAAAATCGAA
GAAGAGCTTGAAGCTGAGCTTGCGAGATTGGAATTAAATATAACTTCAAACTGCTTGAAA
GAACAAACATTTGACTTCAGTGAGGTTGAACAGGATCTCATTGGAGATATTGTCCAGGGA
GAACTGAAGATCGATACAACCCATTGTGATCTTGCTGACCACAGCAGTGAGAGTGCCCAT
GGCAGGGATAGTAGAGAAAGCTCCCCAGATTACACACATGATGCAAACTATCCTGTCTCA
CCTAGGGATCTCAGCCTCCGTCTCCACAAGGTAATCCAACAGAGACTCGAGGAGCGAATC
AAGGAACTTGAGACAACACTTGCCCAGAGTGAGATGCAGACGCAGGTGCAAGTGATGGCC
ACCGAGCAGATCTTGTGTGAAAGAACCTGCTCAGACAGTGATTCTGGTTCTCCCAACCAG
GAAAGTCCAGTGTATATACAAGAAACTAACTCCTTGGTAGAACCGTTCTGTCTAAACCTA
GCTGGAGACGCGCTAGAGGCTTACGATGAAGCTTATGAGGAATTCATGAGAATTGCGGAC
TCCCCTTGCACCACAAGTACCAACGGGAAGCCTCAAGTTCATGAAGATTACTCGGTGGAC
CGCAGCTTGATCTGGGGCTTGGAGGATGGCAGTGCAAGGAAGCTGAAAAAAGTGCCCACT
TGGGAGCGAATTTTAAAGAGCAGAGAGCCTAACAGAACTCAGGAGAGTGACGGAGATGAT
GAAGATGAATTTGAAGATGATGACCAGGATAGTAAGATGCTCATCCAACAGATTATAGAG
AGAACTAAACAAGGCTCACCTGTACTAATTCATGCTCAAAGAATATTGTTTTCTGTGGAT
GATTAG

Peptide Sequence

PEP ID

Os12t0576300-02
PEP Infomation

pep chromosome:IRGSP-1.0:12:23794337:23796879:-1 gene:Os12g0576300 transcript:Os12t0576300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0576300-01);Conserved hypothetical protein. (Os12t0576300-02)
Sequence

CTFGPAPSPASARPFIVTDGRRVISKSRYQPVPVPFHIGFEKEGRRNSSEMVESVIGIAP
LPELKKSKRERQGSHNGGMGLSAFESSKPSKSTDLLARLRIFSTGVSIGIISSTLSNKNE
LDALKGTVKRMENLIQDLHDELEMREGLTVKELPNEMSVKIDDDESKAHVTDSEPMSKIE
EELEAELARLELNITSNCLKEQTFDFSEVEQDLIGDIVQGELKIDTTHCDLADHSSESAH
GRDSRESSPDYTHDANYPVSPRDLSLRLHKVIQQRLEERIKELETTLAQSEMQTQVQVMA
TEQILCERTCSDSDSGSPNQESPVYIQETNSLVEPFCLNLAGDALEAYDEAYEEFMRIAD
SPCTTSTNGKPQVHEDYSVDRSLIWGLEDGSARKLKKVPTWERILKSREPNRTQESDGDD
EDEFEDDDQDSKMLIQQIIERTKQGSPVLIHAQRILFSVDD

Transcript Sequence

Transcript ID

Os12t0576300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23794337:23796879:-1 gene:Os12g0576300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os12t0576300-01);Conserved hypothetical protein. (Os12t0576300-02)
Sequence

GTGCACGTTTGGGCCAGCTCCCTCCCCCGCTTCTGCTAGGCCGTTCATCGTAACAGATGG
AAGGAGAGTCATTAGTAAGTCACGTTATCAACCAGTGCCTGTACCATTTCATATTGGATT
TGAGAAGGAAGGGCGTCGAAACAGCTCAGAAATGGTGGAAAGTGTAATTGGGATTGCTCC
TCTACCTGAGCTGAAGAAATCAAAAAGGGAGAGGCAGGGATCACACAATGGAGGGATGGG
TTTGTCTGCTTTCGAGAGTAGTAAGCCATCAAAATCAACAGATTTACTTGCTCGACTGCG
CATATTCTCTACTGGTGTCAGTATTGGTATTATATCATCCACTTTATCAAACAAGAATGA
GCTTGATGCATTAAAGGGTACAGTGAAACGAATGGAGAACTTGATTCAAGATCTGCATGA
TGAGCTGGAGATGAGAGAGGGTTTAACTGTAAAGGAATTGCCTAATGAAATGTCTGTAAA
AATTGATGATGATGAGAGCAAAGCTCATGTAACTGATTCAGAGCCCATGAGCAAAATCGA
AGAAGAGCTTGAAGCTGAGCTTGCGAGATTGGAATTAAATATAACTTCAAACTGCTTGAA
AGAACAAACATTTGACTTCAGTGAGGTTGAACAGGATCTCATTGGAGATATTGTCCAGGG
AGAACTGAAGATCGATACAACCCATTGTGATCTTGCTGACCACAGCAGTGAGAGTGCCCA
TGGCAGGGATAGTAGAGAAAGCTCCCCAGATTACACACATGATGCAAACTATCCTGTCTC
ACCTAGGGATCTCAGCCTCCGTCTCCACAAGGTAATCCAACAGAGACTCGAGGAGCGAAT
CAAGGAACTTGAGACAACACTTGCCCAGAGTGAGATGCAGACGCAGGTGCAAGTGATGGC
CACCGAGCAGATCTTGTGTGAAAGAACCTGCTCAGACAGTGATTCTGGTTCTCCCAACCA
GGAAAGTCCAGTGTATATACAAGAAACTAACTCCTTGGTAGAACCGTTCTGTCTAAACCT
AGCTGGAGACGCGCTAGAGGCTTACGATGAAGCTTATGAGGAATTCATGAGAATTGCGGA
CTCCCCTTGCACCACAAGTACCAACGGGAAGCCTCAAGTTCATGAAGATTACTCGGTGGA
CCGCAGCTTGATCTGGGGCTTGGAGGATGGCAGTGCAAGGAAGCTGAAAAAAGTGCCCAC
TTGGGAGCGAATTTTAAAGAGCAGAGAGCCTAACAGAACTCAGGAGAGTGACGGAGATGA
TGAAGATGAATTTGAAGATGATGACCAGGATAGTAAGATGCTCATCCAACAGATTATAGA
GAGAACTAAACAAGGCTCACCTGTACTAATTCATGCTCAAAGAATATTGTTTTCTGTGGA
TGATTAGATTGTTGGACTATATTGAATTAGAATTTAGTGCCAATTGATTGTTTAGAGAAA
AAAACATAATATTATTCTTTTCATCATCTTCCGGTGATACAATTTTTCAATGTGTGTTAT
AAGCTCT