Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0572500-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:23596228:23600217:1 gene:Os12g0572500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Region of unknown function XH domain containing protein. (Os12t0572500-01)
Sequence

ATGGCAGAGACCAGAGGCGTGGGTGGGCGCCTTGCGGCATTGGCTTCTAAGGTGGACTCG
AAGATATATTATCTCAAGGATGTGTTGGTTGAGTACATGGACATGAAAAATGTGGTTGCT
GAAATAGCAGAGGAGAGGGAGAGGTTCCAGCTTGAACAGCGTGGAAATGACGCACTTCTG
GAAGCAATGAAGGAGGAGCTTGTGGCAGCAAACAACGAGCTCGAAGCAGCAAAAGAGGAA
ATCTCTCGAAAGAACAATGAGCTAGAGTCTGTAAAGAAACAGCTTCAAGAGAGTGAAGCG
AGAAATATTCAGGCTGAGCAGCAGAGCGGCATTGTGGTTGAGCTTATGCAACCAAGAGGG
GTGCAAACAAGATCGATGCAAAAACGCAAAAGGCCATTGCAAGGACCTTCGGGCTGTGAG
GCTGATGACCAAGAGTATACGAGTCAAATCAATGTCCAATCTCCACGTTGCTTGGAATCG
ATGAGAACTCCTGATGTCAAGAAAAGATCGGTGCAGAAACAAAAACATTTATCTCAAGGA
CTTCCAGGTGATCCTGGTGAGCTTCAGTTAATGGAAGGGCATCTGAGTGACCCGAATGCT
GGGGAAGCCTCAGGTGCTCTGGTGAGCAAAGATGATGACCTGGAGGCAGTTAGAGAAGAG
TTGATCAAGGGATTCCTTGACATTGATAACGGTGGACGGAAACTTGGGATAAAGGAAATG
GGACAGTTGAATGAGAAGGTGTTCCAGATTGCATGTCTTGCTAAGCTACCTCCAGAAGAA
GTTGGCGAGGCATCGTATGAACTATACTCATCGTGGCAGAAGCAACTCAGTGACCTAAGC
TGGAATCCCTTCAAGACAATCACAGTTGATGGTAACGGTAAGGAGATTGTGAATGTTGAT
GATGAAAAGCTGCAAGAGCTTAAGAGGGACTATGGAGAAGGTGCTCACAAGGCTGTCATG
AATGCACTAATGGAGATGAAAGAGTATAATGTCCTAGCTGACAGAAGCATCGCGTATGAG
CTGTGGAACTACAAGGATGGGAGGAAGGCCACCCTGCGTGAGTGTGTTGAGTACGTTTGC
AATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGTGGTGA

Peptide Sequence

PEP ID

Os12t0572500-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:23596228:23600217:1 gene:Os12g0572500 transcript:Os12t0572500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Region of unknown function XH domain containing protein. (Os12t0572500-01)
Sequence

MAETRGVGGRLAALASKVDSKIYYLKDVLVEYMDMKNVVAEIAEERERFQLEQRGNDALL
EAMKEELVAANNELEAAKEEISRKNNELESVKKQLQESEARNIQAEQQSGIVVELMQPRG
VQTRSMQKRKRPLQGPSGCEADDQEYTSQINVQSPRCLESMRTPDVKKRSVQKQKHLSQG
LPGDPGELQLMEGHLSDPNAGEASGALVSKDDDLEAVREELIKGFLDIDNGGRKLGIKEM
GQLNEKVFQIACLAKLPPEEVGEASYELYSSWQKQLSDLSWNPFKTITVDGNGKEIVNVD
DEKLQELKRDYGEGAHKAVMNALMEMKEYNVLADRSIAYELWNYKDGRKATLRECVEYVC
NQVKQLTVTKRRKSRRW

Transcript Sequence

Transcript ID

Os12t0572500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23596228:23600217:1 gene:Os12g0572500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Region of unknown function XH domain containing protein. (Os12t0572500-01)
Sequence

CTTTTGTTATTCCAGCGAGTTTTTGGGTTCTTTGTGTGATTTGGATGGAAGGTGGGCTTC
AGGACTGGTGGTGATAACTGGCTGTTGGTAAGGAAACATGGCAGAGACCAGAGGCGTGGG
TGGGCGCCTTGCGGCATTGGCTTCTAAGGTGGACTCGAAGATATATTATCTCAAGGATGT
GTTGGTTGAGTACATGGACATGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAG
GTTCCAGCTTGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGT
GGCAGCAAACAACGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCT
AGAGTCTGTAAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCA
GAGCGGCATTGTGGTTGAGCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAA
ACGCAAAAGGCCATTGCAAGGACCTTCGGGCTGTGAGGCTGATGACCAAGAGTATACGAG
TCAAATCAATGTCCAATCTCCACGTTGCTTGGAATCGATGAGAACTCCTGATGTCAAGAA
AAGATCGGTGCAGAAACAAAAACATTTATCTCAAGGACTTCCAGGTGATCCTGGTGAGCT
TCAGTTAATGGAAGGGCATCTGAGTGACCCGAATGCTGGGGAAGCCTCAGGTGCTCTGGT
GAGCAAAGATGATGACCTGGAGGCAGTTAGAGAAGAGTTGATCAAGGGATTCCTTGACAT
TGATAACGGTGGACGGAAACTTGGGATAAAGGAAATGGGACAGTTGAATGAGAAGGTGTT
CCAGATTGCATGTCTTGCTAAGCTACCTCCAGAAGAAGTTGGCGAGGCATCGTATGAACT
ATACTCATCGTGGCAGAAGCAACTCAGTGACCTAAGCTGGAATCCCTTCAAGACAATCAC
AGTTGATGGTAACGGTAAGGAGATTGTGAATGTTGATGATGAAAAGCTGCAAGAGCTTAA
GAGGGACTATGGAGAAGGTGCTCACAAGGCTGTCATGAATGCACTAATGGAGATGAAAGA
GTATAATGTCCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAG
GAAGGCCACCCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCACAGT
GACCAAGCGCAGGAAGTCTCGCAGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACT
AATCCATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAA
TGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAA
ACTATGAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAG
TTGTGGCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTA
TTTACATGAGACCTATAGTTAATGTCTG