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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os12t0569500-01
CDS Infomation

cds chromosome:IRGSP-1.0:12:23435458:23436485:1 gene:Os12g0569500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thaumatin, pathogenesis-related family protein. (Os12t0569500-01)
Sequence

ATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCC
ATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCG
TACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATA
CGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCG
GGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCG
CCGCCGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGC
GTCAACCTCGGGGAAGGGTTCAACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGC
GGGATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCAG
CGCGTGTACGGCGGCGACACCGGCGGCGACGTCGTGGCGTGCAGGGGGCCGGCGAGCTAC
TTCAAGCAGCGGTGCCCGCTGACGAGGACGGGCGGGGGCGACGTGGAGCCCGTGCCGCAG
CACTGCATCTCCCCCGGCGAGATCAAGCTCGTCTTCTGCCAGGCCGCCATGGTCGCCGGC
GAGCCGGAGCTCATCCGCACCGTCGACGTCGCCGACAACTAG

Peptide Sequence

PEP ID

Os12t0569500-01
PEP Infomation

pep chromosome:IRGSP-1.0:12:23435458:23436485:1 gene:Os12g0569500 transcript:Os12t0569500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thaumatin, pathogenesis-related family protein. (Os12t0569500-01)
Sequence

MANKLQLAIAFVVVVVVLGAMAASAAAAVAPMLTMHNLCPYTVWPIVSPDSGSPPIADGI
RLEGRGVGLRSLNLPAGFWSGRVVPRTWCRDGGRCDTGNAPPATVVRLSFNGAGGLAEYS
VNLGEGFNVPTVVSPHAIGGGMCPALGCTADLNAGCAAGQRVYGGDTGGDVVACRGPASY
FKQRCPLTRTGGGDVEPVPQHCISPGEIKLVFCQAAMVAGEPELIRTVDVADN

Transcript Sequence

Transcript ID

Os12t0569500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:12:23435458:23436485:1 gene:Os12g0569500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thaumatin, pathogenesis-related family protein. (Os12t0569500-01)
Sequence

ATACTCATCAGTTCATCACAGAGAGAAAAGTTTGCACACAGCTAGCATGGCGAACAAGCT
GCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGC
GGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCC
GATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCG
CGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCC
GCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGCGACGGT
GGTGAGGCTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGA
AGGGTTCAACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGC
GCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCAGCGCGTGTACGGCGG
CGACACCGGCGGCGACGTCGTGGCGTGCAGGGGGCCGGCGAGCTACTTCAAGCAGCGGTG
CCCGCTGACGAGGACGGGCGGGGGCGACGTGGAGCCCGTGCCGCAGCACTGCATCTCCCC
CGGCGAGATCAAGCTCGTCTTCTGCCAGGCCGCCATGGTCGCCGGCGAGCCGGAGCTCAT
CCGCACCGTCGACGTCGCCGACAACTAGCTAGCCTAGCCGGCCGGTCCGTTAATTAATTA
CGTGTGTTTTAATTAGTGCGTGTTTAACTAGTTAATCAGATCATCAAGCAGTTAAATAAT
TAATTAATTACTCCGGTTGGCCCGCGCTAACTGCTAATAAGTGCACATGGAATAACAAAG
GCGGGGTACGTACATATGTACGTACCCTTATGTTTGTACGTGCGCATATACGTGTTTTAA
TTACTCTAGTATTGTATACATACTTGTGTACGTACGTCTACATCGTATATTCGTATTGTG
TTTTTGTG